H.pylori Rhesus Microbiome Analysis

Data used in analysis

ASV Count Table

ASV Count Table
	LMiller_00458.BAL	LMiller_00459.BAL	LMiller_00461.BAL	LMiller_00462.BAL	LMiller_00463.BAL	LMiller_00466.BAL	LMiller_00467.BAL	LMiller_00468.BAL	LMiller_00469.BAL	LMiller_00473.BAL	LMiller_00474.BAL	LMiller_00476.BAL	LMiller_00477.BAL	LMiller_00481.BAL	LMiller_00458.Swab	LMiller_00459.Swab	LMiller_00461.Swab	LMiller_00462.Swab	LMiller_00466.Swab	LMiller_00467.Swab	LMiller_00468.Swab	LMiller_00469.Swab	LMiller_00473.Swab	LMiller_00476.Swab	LMiller_00477.Swab	LMiller_00481.Swab
3093cc8f14899ad0a903ad74583c1bed	0	0	0	0	0	0	0	37	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
f93c45431d741ea9c35fbce351cf9514	0	0	0	0	0	0	22	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
1b98b00b0fc819488d76aa0c09d57bcc	0	0	0	0	0	0	6	38	0	0	0	58	0	0	0	0	0	0	0	0	0	0	0	0	0	0
09f9294499192d4eecf29e85501cc425	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	29	0	15	62	0	0	17	0	47	97	0
86fc22982da07ab2a62935194f7c6f7d	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	11	0	21	76	0	0	0	0	0	14
65b2fb4442cdc2200be457cce105df9d	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	58	455	0	0	0	0	0	0
e63dfdbc2865ef713259926ddf0177d2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	181	0	0
164888579b3fc5fa594b1a3f92f6be9e	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	30	0	0	0	0	231	0	0	0	0	0
5f78c6469abc75369906f18cf0642d99	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	531	0	0	50
53f35fbed6b19a16f807663858c1fa87	0	0	0	0	14	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
d48197bd92b8c6a3f172ac4dd30d91eb	0	0	0	0	0	4	0	0	0	0	0	0	0	0	438	42	35	70	120	101	82	80	112	70	62	45
fc8675312fba62140c723a9429998935	0	0	0	0	0	0	0	0	0	0	0	0	0	0	14	0	0	0	0	0	0	0	0	0	0	0
8b33fbebe288284c0dbd87b16f900e55	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	29	0	32	0	0	0	0	0
eabdd9c6aafdfef7838ebf30c547c9d1	0	0	0	0	0	0	49	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
e104c243ea51ee7b69c455fabfd7dad7	0	76	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
1bdad0b4f050c7cbdd63f50b2e03fba7	90	2503	563	41	562	21	740	587	490	35	116	615	288	218	0	0	0	0	0	0	0	0	0	0	0	0
a64d7739eca07ac196f81d593895fb85	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	12	11	0	0	0	0	0
daf2e8915db65fd0667cfb7ac598f6c5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	91	18	0	0	0	0	12	0
16b5557da675aa2b9f51caa7bf36581c	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	41	95	0	0	0	0	0
abb93be57b1955eb8b72b962a1718ec9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	146	0	0	0	0	0	0	0
2a13ffc871287f78ec30a99e4b411039	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	120	0	11	114	124	0	0	0	0	0	9
ad438df65d7ef791daf65c44cb24044a	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	24	0	0	0	0	0	0	0	0	0
4b1ac280cc66f5e47268dc0d33312255	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	36	0	0	0	605	53	0	104	0	0	23
2923feeb11dc42c2f0cb11cdbb8755c9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	24	0	0	0	0	0	0	0	30	0
dd7c265161dab3b6c1a7b745a32e4d31	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	56	0	0	258	126	87	0	0	20	30	0
74c209388c56ee5a93fa225d6f973396	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	122	61	0	0	0	17	0	0
099b8896f5c84538317d75c69d8422e5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	269	0
0436cf47bb12fc3027d94c39ae4d828a	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	102	546	0	0	0	0	47
d04164791bd6b9ffcdf5b33ee129c6b5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	94	56	832	2611	211	42	28	320	0	0
f5e56e5421fe77fa207c8c6c4c16a4fb	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	16	251	66	0	0	38	0	17
160db545d9379a772525027e489d8ef2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	142	345	0	0	26	0	0	0
75ed11f48189490dbb158e1e7e27b167	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	60	0	0	363	132	76	0	0	0	0	0
36c80daae98d2dc716916ade3e852047	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	20	0	0	213	298	61	0	0	0	0	0
a82d1e0712d504e0239634e3e5321438	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	15
697c3c5367c73e389a9a034ce1d7b737	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	21	0	17	0	0	0	0	0
d60593a75368eb2dd66ecbbec3313863	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
f5ffd05c1e22f1cdcd3e9f384e8cb317	0	0	0	0	0	0	0	75	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
290a870c0b153a6f31aa38df81ae5e9d	0	25	0	0	0	0	28	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
416f578790b3f0667464e5cc97464a55	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	23	0	25	0	0	0	8	0
647d11bd18aab6cfb71a394ecdab0c27	20	0	25	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	14	0	0	0	0	0	0
b26833da2db0de54b3c32954c30fa48b	0	0	32	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
b70052f1527ee64b4d266d671f5a14c3	198	0	25	0	9	108	0	0	0	8	0	0	548	33	5929	0	9	2380	33	206	1271	21	2571	444	3966	223
401a1c628ed64d8c9241b7082e2cda0f	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
f278701143062813b9855df7e5c03f24	0	0	0	40	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
426a58d7fde254d8ff01fac25e36ff0e	0	0	0	0	0	0	0	0	0	0	0	0	0	0	23	0	0	0	0	0	0	0	0	0	0	9
d1934d7c94c720cfef10dcdda067a628	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	42	0	0	0	0	0	0	0
4fad8f0426e8eda5207b78b5e76cc3c4	0	0	0	0	0	0	0	0	0	0	0	0	45	0	131	13	0	0	52	147	126	0	2392	0	1277	0
0a21726cd4952a96635576553da67787	226	0	0	0	0	500	0	0	0	0	0	0	309	0	224	0	150	1698	736	0	453	0	168	275	2463	49
8ace2448befe36dc39fce9ad15a39983	0	0	0	0	0	0	0	0	0	0	0	0	240	0	0	0	0	0	0	0	0	0	0	0	0	0
46412791f6227728741db1fac098dc23	0	0	0	0	0	0	0	0	0	0	0	0	0	0	71	0	0	16	0	0	0	0	55	0	1980	9
d3bd11fd8f3cbbc4c15c2aec85761131	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	75	0
00d4ed68e73301c40a34c5f4e70aa342	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	39
baa3ee92750f65a79400a3496948666f	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
f32f77adf5200e164c25fc750b1316b9	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
d150d6fad77ceca71da50f4a347bbdee	0	60	89	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
df37b62e507e32409df4885c1ad2ce14	0	0	0	0	0	0	0	0	0	0	0	0	0	31	0	0	0	0	0	0	0	0	0	0	0	0
bd4bbed1242b5b5d6432dd913258b691	0	0	67	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
9ba6fd3e1c6b40ecd8c1dc35a6836c79	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
e6254f3b5a16e0b168db873d5ca3b1ca	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
fb3bfadb9daebbae195a2fe1dfe318e6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	158	0
0b9121c5f4cc15f1ff7b5509946137e6	0	0	0	0	0	0	0	0	0	0	0	0	56	0	0	0	0	0	0	0	0	0	0	0	0	0
87f48a9d781c3b72abf3fa92f896f2f7	36	0	0	0	0	50	0	0	0	0	0	0	0	0	150	0	0	0	97	0	0	0	0	0	0	0
b7d858871c56b4130c6556ce3f29fd20	0	94	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
d81947531814a1fe71c12a67d3cc5c2f	0	159	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
da6a7cba87e0895b9cbe6037b9bd8b3b	24	481	0	54	0	0	0	0	0	0	0	0	0	0	0	0	0	34	21	0	14	27	0	0	29	0
675c847bccbc53942ebb7b8cbb4efc4d	0	679	0	33	0	0	0	0	0	0	0	0	0	0	45	36	20	0	0	0	0	0	32	0	0	0
f33bfd8864ae5b60963b8b929de87561	0	59	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
77fc8c8486167edc801c5043afff5886	0	125	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
9441ebd7d976e935bd4f3f85ad6b9cd5	0	78	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
c890ba30bf6a001d11929e3d668b59ad	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	26
26931bf4bb8670b19ce17f4ac2eb65d2	0	0	0	16	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
712f610d95151fd7db44bd3a13e3ad15	0	0	0	0	28	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
32f8fd11d2bee278d609a1d4ab767554	0	0	0	0	0	0	0	0	0	56	0	0	17	0	0	0	0	0	0	0	0	0	0	0	0	0
6d2fe5e4cd55c89c512f6cd275e19a0f	0	0	0	39	0	0	0	0	0	0	0	0	264	0	0	0	0	0	0	0	0	0	0	0	42	0
116b000bcdd330f4319bda48bd997abf	3	56	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
23b8bac0a94108cbf1f74ab89aec965b	0	0	0	0	0	0	0	0	20	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0
f0801df3310d0f06c07a96b1a2542be0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
cbef40f459197faa8de7bba6a4764a34	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
3f12a0e59a953a1871265f6f4fa579f9	0	0	0	25	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
84f78f5ce68484506a620a9c8d2e2acf	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7	0	17	0	28	0	0	0	0	12
510fc7ce79e4b9d729b7c819bf9e11c0	0	36	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0
49c9253965d56bb180d4f561cf8d84e8	0	30	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
4cddc40fdec49f4b0ff037423eb87508	12	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0
69e34725046181e6cd5f33d9fb348af5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0
e63ffa8bebe9df680f70be3bef91764a	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	190	0	0	0	65	3400	0	363	0	0
f2962123bb8adaeb1b746ef8a4f7f836	136	66	14	22	0	585	0	28	0	13	0	75	568	0	3220	0	672	2270	3141	4138	5500	4933	771	1422	3084	432
53574d96bc87bc4627cabdfd91d76f6b	0	0	0	0	0	0	0	0	0	0	0	0	0	14	0	0	0	0	0	0	0	0	0	0	0	0
83e4a73079b72096bd9977dd7432d6c6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	118	0	0	0	73	0
456161d143404951deb16068641baa6a	418	0	0	0	0	188	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
899befdfdfdd08fe72df5def771a14b3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	579	0	0	0	0	0	0
8e6a7b11fe615c61f76969d70ec45683	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	92	0	0	0	0	0	0	0
b72f553aef14f8ef9f2765e42c6b2d7a	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	47	0	0	70	0	0
224102d609b83a172b11bd9115107f16	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	237	0	0	0	0	0	0
7da9ea0ec3649a2fbfa3741ba3fa5f9d	0	0	84	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
8d781fd45124d1e47ca5d12f6d6d4867	0	0	8417	0	0	2242	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
1a794428f534b81a86ddc63868ee5c79	0	0	0	0	0	0	15	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
f7abb471a96bfa8f310a879a94b3c40c	15	265	0	7	27	0	40	77	25	0	0	12	25	20	0	0	0	0	0	0	0	0	0	0	0	0
6539cdf264635d79b1ab259dd5b3b4f0	0	0	0	0	0	0	13	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
0e4b96294f2a2985a5d7fd8c87f7ce6d	0	32	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
3fcc25b2980ff3e947b58c198106dd41	0	0	0	0	0	0	136	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
9ec111134b7f857a1d270b470fbf331e	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	29	0	0	0	0	0
c93b4ca3ad027d51d34b0a709e5c8e7d	0	0	0	0	0	0	0	63	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
740d90e488e102d30a456e0be1424529	51	466	321	109	294	73	276	291	99	0	32	613	786	94	0	0	0	0	0	0	0	0	0	0	0	0
05af8312a092f309b269c945433c8793	0	0	106	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
38b148b47cb8a9c1f05e1acbd1aede41	0	0	0	0	0	0	0	47	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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923f521b9cf313f1f95c9367e09bbc1c	0	0	0	14	22	0	0	98	58	37	0	55	0	33	0	0	0	0	0	0	0	0	0	0	0	0
e793490ff3ebd72c4457a0e1f427eb5c	0	0	0	0	0	0	0	0	0	0	0	161	0	0	0	0	0	0	0	0	0	0	0	0	0	0
e4916954a7b156cbb911bb3c0af10d53	0	0	7	0	0	0	3	0	0	0	0	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0
b6254c4d9f9e5f89f3060f6805754c17	0	0	0	0	0	0	0	0	0	0	0	0	0	35	0	0	0	0	0	0	0	0	0	0	0	0
a0871318729fc2d9f6ae1be8b45fa952	0	10	0	0	0	0	0	0	0	0	0	0	34	33	0	0	0	0	0	0	0	0	0	0	0	0
ee864e547658d4889c993de87b1a349a	0	0	0	0	14	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
aafb6ca6537c21f170ece1de474769ab	0	54	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
65d43491988bfe557da4d86a5ba25dae	83	309	36	7	284	26	10	536	37	82	296	246	197	69	0	0	0	0	0	0	0	0	0	0	0	0
8339a12705dd373194b95ba731c47af8	0	0	0	0	0	0	0	87	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
f849febf52b4ae538554b6e65d7fc47c	0	84	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
126e0259d6df65a50a9d14149a30f477	0	0	0	0	0	0	0	0	0	0	0	0	71	0	0	0	0	0	0	0	0	0	0	0	0	0
9e1b1776cd5973bca311645149a85b87	25	39	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
5b30ecd29701a77b385770d15cab1704	0	0	0	0	0	0	0	0	0	0	0	0	0	0	64	718	0	0	0	32	0	0	0	0	176	0
c52d6c2088db628632b7a14c0e5d752d	0	0	0	0	0	0	0	11	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
d23346fdcf9ebe8e57dbd511acaee05d	0	0	0	0	0	0	0	0	0	0	0	0	0	0	149	0	0	0	0	0	0	0	0	0	0	0
26633175b4d2a2f5feb6ebb9b87321f3	0	0	29	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
85c44c83eddc5d3028261a1000b7d0e1	164	206	0	0	0	90	8	0	0	549	0	63	413	34	1146	448	1105	502	380	174	782	1008	1719	415	476	804
b03d2e5ac94c7a0d115e5c542e9315e8	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
50fd1c9614c2cdbad76a0cee521fb46b	0	0	0	0	0	0	0	0	0	0	0	42	0	0	0	0	0	0	0	0	0	0	0	0	0	0
65641452be75528754b5ae258ba661c1	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
29fbc7e5021229480248fa7466a499a2	0	0	26	0	0	0	0	0	0	16	0	0	0	0	47	376	35	19	26	170	47	168	278	101	101	49
05bd1d289c2bccf4501b2f90976e531b	0	0	0	0	0	0	0	0	0	0	0	71	0	0	0	0	0	0	0	0	0	0	0	0	0	0
8e53132374397c334ee9f914a57b3edd	0	0	0	12	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
95fdd816723ca482a5caba10bea171c8	0	60	0	24	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
45d4fe3f6c01f77c2dfc11dd91d3359a	0	0	0	0	0	0	0	0	0	0	0	0	0	13	0	0	0	0	0	0	0	0	0	0	0	0
d6a526b572996ed919a3e009473bc860	0	0	0	25	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
5d1665b0e47078aaf2b5fe621d09976d	0	0	0	28	17	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
0df6c802966e8670279671824da4f10a	0	0	0	0	0	0	0	0	0	0	0	0	0	12	0	0	0	0	0	0	0	0	0	0	0	0
2bd9309f2f97cae51d18d06ea1ca519a	0	0	0	0	0	0	37	0	8	0	0	0	0	0	0	0	0	0	0	70	0	0	0	0	0	0
9908fffab7ed4f3bec44cda2f5084d49	0	40	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
9e75d15ba3717ca20d8aa45e3c4a6bab	8	31	51	0	0	0	5	0	18	0	0	57	19	54	0	0	0	0	0	0	0	0	0	0	0	0
06f825b512d903b9230e1a55d87359ee	39	24	29	0	1252	0	0	0	24	71	0	58	33	0	266	697	251	58	221	1023	170	138	1022	1480	375	150
55b7b7586b6252b87981f170d6ac11c5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	206	0	298	35	0	0	110	415	958	221	211	1430
b4fd80c189d9f173e66fcea1caf8111e	1974	0	0	34	0	181	0	155	0	2412	0	163	515	0	1268	1096	5849	1507	435	312	1833	788	1049	504	279	4754
b2001ab4daf61a63d9d2f980bdf2c3dd	0	0	67	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
108bd50f45057fda4dd3f24f9fae46fa	0	0	0	0	0	0	0	0	0	122	0	0	0	17	0	0	0	0	0	0	0	0	0	0	0	0
2cc07609ab15894baed9fe4c508dd12d	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0
197157305cb21721cdc0e4aadc9460e2	0	0	0	0	0	0	13	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
aa231e014d821dc7845da2972df0a230	0	25	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
41c50945f46692bc4a1552bfcb20f397	508	511	0	0	85	89	0	157	25	645	0	65	0	0	374	286	2405	453	2433	259	277	645	99	1368	336	6227
94b8f960aa3adb2f6f23adf0c26e6058	0	0	0	0	0	126	0	0	0	0	0	0	39	0	76	0	0	0	129	0	418	145	0	0	58	0
5179a2d863129db0480a654447b8b62b	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	523	0	0	0	0	0	0	0	0	0
edc9e5c16e40aff1eadce6597940f08f	73	0	56	0	570	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
492d3ad15aeb63c93e1c94ed7853f5af	0	0	0	29	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
a966196c8aff0e8664f261016da82614	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	19	0	0	0	0	34	108
027cc4e57f832f6792df8fc21ffd9bbb	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	19	0	0
4ba7a78de011ba7897f307038d1e1bab	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	57	0	86	0	0	0	0	0
1b51357852b0b814b4d9918c6f0ab762	0	58	0	0	0	0	0	0	0	42	0	0	0	0	0	676	0	0	0	0	79	209	156	0	0	0
39414efe8e809129734b7c33d06c42b7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	101	2075	263	40	314	397	283	282	111	205	88	218
9fec7bdd6bd88e710bd69b15692e54a0	0	0	0	0	0	0	0	0	0	0	0	0	0	79	0	0	0	0	0	0	0	0	0	0	0	0
860d345a8b6afb765a0e588654f08c1d	410	144	0	0	0	0	0	78	0	0	0	0	0	0	93	424	0	171	20	0	0	228	0	237	0	0
e7cfd084265c4df4856ca07b1c9b24ee	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	17
d58e3747278152d2506e3587184efd10	0	0	0	0	0	0	0	0	0	19	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
d114fb4c335125128be28401522dd41a	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

ASV Taxa Table

ASV Taxa Table
	Kingdom	Phylum	Class	Order	Family	Genus	Species
3093cc8f14899ad0a903ad74583c1bed	k__Bacteria	p__Bacteroidota	c__Bacteroidia	o__Bacteroidales	f__Rikenellaceae	g__Alistipes	NA
f93c45431d741ea9c35fbce351cf9514	k__Bacteria	p__Bacteroidota	c__Bacteroidia	o__Flavobacteriales	f__Weeksellaceae	g__Chishuiella	s__Chishuiella_changwenlii
1b98b00b0fc819488d76aa0c09d57bcc	k__Bacteria	p__Bacteroidota	c__Bacteroidia	o__Flavobacteriales	f__Weeksellaceae	g__Elizabethkingia	NA
09f9294499192d4eecf29e85501cc425	k__Bacteria	p__Bacteroidota	c__Bacteroidia	o__Flavobacteriales	f__Weeksellaceae	g__Bergeyella	s__uncultured_bacterium
86fc22982da07ab2a62935194f7c6f7d	k__Bacteria	p__Bacteroidota	c__Bacteroidia	o__Flavobacteriales	f__Weeksellaceae	g__Bergeyella	NA
65b2fb4442cdc2200be457cce105df9d	k__Bacteria	p__Bacteroidota	c__Bacteroidia	o__Flavobacteriales	f__Weeksellaceae	g__Bergeyella	NA
e63dfdbc2865ef713259926ddf0177d2	k__Bacteria	p__Bacteroidota	c__Bacteroidia	o__Flavobacteriales	f__Weeksellaceae	g__Bergeyella	NA
164888579b3fc5fa594b1a3f92f6be9e	k__Bacteria	p__Bacteroidota	c__Bacteroidia	o__Flavobacteriales	f__Weeksellaceae	g__Bergeyella	NA
5f78c6469abc75369906f18cf0642d99	k__Bacteria	p__Bacteroidota	c__Bacteroidia	o__Flavobacteriales	f__Weeksellaceae	g__Bergeyella	NA
53f35fbed6b19a16f807663858c1fa87	k__Bacteria	p__Bacteroidota	c__Bacteroidia	o__Flavobacteriales	f__Weeksellaceae	g__Bergeyella	NA
d48197bd92b8c6a3f172ac4dd30d91eb	k__Bacteria	p__Bacteroidota	c__Bacteroidia	o__Flavobacteriales	f__Weeksellaceae	g__Bergeyella	NA
fc8675312fba62140c723a9429998935	k__Bacteria	p__Bacteroidota	c__Bacteroidia	o__Flavobacteriales	f__Weeksellaceae	g__Bergeyella	NA
8b33fbebe288284c0dbd87b16f900e55	k__Bacteria	p__Bacteroidota	c__Bacteroidia	o__Flavobacteriales	f__Weeksellaceae	g__Bergeyella	s__uncultured_Bergeyella
eabdd9c6aafdfef7838ebf30c547c9d1	k__Bacteria	p__Bacteroidota	c__Bacteroidia	o__Flavobacteriales	f__Flavobacteriaceae	g__Flavobacterium	NA
e104c243ea51ee7b69c455fabfd7dad7	k__Bacteria	p__Bacteroidota	c__Bacteroidia	o__Flavobacteriales	f__Flavobacteriaceae	g__Flavobacterium	s__Flavobacterium_ceti
1bdad0b4f050c7cbdd63f50b2e03fba7	k__Bacteria	p__Bacteroidota	c__Bacteroidia	o__Flavobacteriales	f__Flavobacteriaceae	g__Flavobacterium	s__Flavobacterium_ceti
a64d7739eca07ac196f81d593895fb85	k__Bacteria	p__Bacteroidota	c__Bacteroidia	o__Flavobacteriales	f__Flavobacteriaceae	g__Capnocytophaga	NA
daf2e8915db65fd0667cfb7ac598f6c5	k__Bacteria	p__Bacteroidota	c__Bacteroidia	o__Flavobacteriales	f__Flavobacteriaceae	g__Capnocytophaga	NA
16b5557da675aa2b9f51caa7bf36581c	k__Bacteria	p__Bacteroidota	c__Bacteroidia	o__Flavobacteriales	f__Flavobacteriaceae	g__Capnocytophaga	s__Capnocytophaga_granulosa
abb93be57b1955eb8b72b962a1718ec9	k__Bacteria	p__Bacteroidota	c__Bacteroidia	o__Flavobacteriales	f__Flavobacteriaceae	g__Capnocytophaga	s__Capnocytophaga_granulosa
2a13ffc871287f78ec30a99e4b411039	k__Bacteria	p__Bacteroidota	c__Bacteroidia	o__Flavobacteriales	f__Flavobacteriaceae	g__Capnocytophaga	s__Capnocytophaga_granulosa
ad438df65d7ef791daf65c44cb24044a	k__Bacteria	p__Bacteroidota	c__Bacteroidia	o__Flavobacteriales	f__Flavobacteriaceae	g__Capnocytophaga	NA
4b1ac280cc66f5e47268dc0d33312255	k__Bacteria	p__Bacteroidota	c__Bacteroidia	o__Flavobacteriales	f__Flavobacteriaceae	g__Capnocytophaga	NA
2923feeb11dc42c2f0cb11cdbb8755c9	k__Bacteria	p__Bacteroidota	c__Bacteroidia	o__Flavobacteriales	f__Flavobacteriaceae	g__Capnocytophaga	s__uncultured_bacterium
dd7c265161dab3b6c1a7b745a32e4d31	k__Bacteria	p__Bacteroidota	c__Bacteroidia	o__Flavobacteriales	f__Flavobacteriaceae	g__Capnocytophaga	NA
74c209388c56ee5a93fa225d6f973396	k__Bacteria	p__Bacteroidota	c__Bacteroidia	o__Flavobacteriales	f__Flavobacteriaceae	g__Capnocytophaga	NA
099b8896f5c84538317d75c69d8422e5	k__Bacteria	p__Bacteroidota	c__Bacteroidia	o__Flavobacteriales	f__Flavobacteriaceae	g__Capnocytophaga	NA
0436cf47bb12fc3027d94c39ae4d828a	k__Bacteria	p__Bacteroidota	c__Bacteroidia	o__Flavobacteriales	f__Flavobacteriaceae	g__Capnocytophaga	NA
d04164791bd6b9ffcdf5b33ee129c6b5	k__Bacteria	p__Bacteroidota	c__Bacteroidia	o__Flavobacteriales	f__Flavobacteriaceae	g__Capnocytophaga	NA
f5e56e5421fe77fa207c8c6c4c16a4fb	k__Bacteria	p__Bacteroidota	c__Bacteroidia	o__Flavobacteriales	f__Flavobacteriaceae	g__Capnocytophaga	NA
160db545d9379a772525027e489d8ef2	k__Bacteria	p__Bacteroidota	c__Bacteroidia	o__Flavobacteriales	f__Flavobacteriaceae	g__Capnocytophaga	NA
75ed11f48189490dbb158e1e7e27b167	k__Bacteria	p__Bacteroidota	c__Bacteroidia	o__Flavobacteriales	f__Flavobacteriaceae	g__Capnocytophaga	NA
36c80daae98d2dc716916ade3e852047	k__Bacteria	p__Bacteroidota	c__Bacteroidia	o__Flavobacteriales	f__Flavobacteriaceae	g__Capnocytophaga	NA
a82d1e0712d504e0239634e3e5321438	k__Bacteria	p__Bacteroidota	c__Bacteroidia	o__Bacteroidales	f__Paludibacteraceae	g__F0058	s__uncultured_bacterium
697c3c5367c73e389a9a034ce1d7b737	k__Bacteria	p__Bacteroidota	c__Bacteroidia	o__Bacteroidales	f__Paludibacteraceae	g__F0058	s__uncultured_bacterium
d60593a75368eb2dd66ecbbec3313863	k__Bacteria	p__Bacteroidota	c__Bacteroidia	o__Bacteroidales	f__Muribaculaceae	g__Muribaculaceae	s__uncultured_Bacteroidales
f5ffd05c1e22f1cdcd3e9f384e8cb317	k__Bacteria	p__Bacteroidota	c__Bacteroidia	o__Bacteroidales	f__Muribaculaceae	g__Muribaculum	NA
290a870c0b153a6f31aa38df81ae5e9d	k__Bacteria	p__Bacteroidota	c__Bacteroidia	o__Bacteroidales	f__Porphyromonadaceae	g__Porphyromonas	NA
416f578790b3f0667464e5cc97464a55	k__Bacteria	p__Bacteroidota	c__Bacteroidia	o__Bacteroidales	f__Tannerellaceae	g__Tannerella	NA
647d11bd18aab6cfb71a394ecdab0c27	k__Bacteria	p__Bacteroidota	c__Bacteroidia	o__Bacteroidales	f__Tannerellaceae	g__Tannerella	s__Tannerella_forsythia
b26833da2db0de54b3c32954c30fa48b	k__Bacteria	p__Bacteroidota	c__Bacteroidia	o__Bacteroidales	f__Tannerellaceae	g__Parabacteroides	NA
b70052f1527ee64b4d266d671f5a14c3	k__Bacteria	p__Bacteroidota	c__Bacteroidia	o__Bacteroidales	f__Porphyromonadaceae	g__Porphyromonas	s__uncultured_bacterium
401a1c628ed64d8c9241b7082e2cda0f	k__Bacteria	p__Bacteroidota	c__Bacteroidia	o__Bacteroidales	f__Porphyromonadaceae	g__Porphyromonas	NA
f278701143062813b9855df7e5c03f24	k__Bacteria	p__Bacteroidota	c__Bacteroidia	o__Bacteroidales	f__Prevotellaceae	g__Prevotellaceae_Ga6A1_group	s__uncultured_bacterium
426a58d7fde254d8ff01fac25e36ff0e	k__Bacteria	p__Bacteroidota	c__Bacteroidia	o__Bacteroidales	f__Prevotellaceae	g__Alloprevotella	s__uncultured_Bacteroidetes
d1934d7c94c720cfef10dcdda067a628	k__Bacteria	p__Bacteroidota	c__Bacteroidia	o__Bacteroidales	f__Prevotellaceae	g__Alloprevotella	s__uncultured_Bacteroidetes
4fad8f0426e8eda5207b78b5e76cc3c4	k__Bacteria	p__Bacteroidota	c__Bacteroidia	o__Bacteroidales	f__Prevotellaceae	g__Alloprevotella	NA
0a21726cd4952a96635576553da67787	k__Bacteria	p__Bacteroidota	c__Bacteroidia	o__Bacteroidales	f__Prevotellaceae	g__Alloprevotella	NA
8ace2448befe36dc39fce9ad15a39983	k__Bacteria	p__Bacteroidota	c__Bacteroidia	o__Bacteroidales	f__Prevotellaceae	g__Alloprevotella	NA
46412791f6227728741db1fac098dc23	k__Bacteria	p__Bacteroidota	c__Bacteroidia	o__Bacteroidales	f__Prevotellaceae	g__Alloprevotella	NA
d3bd11fd8f3cbbc4c15c2aec85761131	k__Bacteria	p__Bacteroidota	c__Bacteroidia	o__Bacteroidales	f__Prevotellaceae	g__Alloprevotella	NA
00d4ed68e73301c40a34c5f4e70aa342	k__Bacteria	p__Bacteroidota	c__Bacteroidia	o__Bacteroidales	f__Prevotellaceae	g__Alloprevotella	NA
baa3ee92750f65a79400a3496948666f	k__Bacteria	p__Bacteroidota	c__Bacteroidia	o__Bacteroidales	f__Prevotellaceae	g__Alloprevotella	NA
f32f77adf5200e164c25fc750b1316b9	k__Bacteria	p__Bacteroidota	c__Bacteroidia	o__Bacteroidales	f__Bacteroidaceae	g__Bacteroides	NA
d150d6fad77ceca71da50f4a347bbdee	k__Bacteria	p__Bacteroidota	c__Bacteroidia	o__Bacteroidales	f__Bacteroidaceae	g__Bacteroides	s__uncultured_bacterium
df37b62e507e32409df4885c1ad2ce14	k__Bacteria	p__Bacteroidota	c__Bacteroidia	o__Bacteroidales	f__Bacteroidaceae	g__Bacteroides	s__Bacteroides_coprocola
bd4bbed1242b5b5d6432dd913258b691	k__Bacteria	p__Bacteroidota	c__Bacteroidia	o__Bacteroidales	f__Bacteroidaceae	g__Bacteroides	s__Bacteroides_barnesiae
9ba6fd3e1c6b40ecd8c1dc35a6836c79	k__Bacteria	p__Bacteroidota	c__Bacteroidia	o__Bacteroidales	f__Bacteroidaceae	g__Bacteroides	s__Bacteroides_coprocola
e6254f3b5a16e0b168db873d5ca3b1ca	k__Bacteria	p__Bacteroidota	c__Bacteroidia	o__Bacteroidales	f__Prevotellaceae	g__Prevotellaceae_UCG-001	NA
fb3bfadb9daebbae195a2fe1dfe318e6	k__Bacteria	p__Bacteroidota	c__Bacteroidia	o__Bacteroidales	f__Prevotellaceae	g__Prevotella	NA
0b9121c5f4cc15f1ff7b5509946137e6	k__Bacteria	p__Bacteroidota	c__Bacteroidia	o__Bacteroidales	f__Prevotellaceae	g__Prevotella	NA
87f48a9d781c3b72abf3fa92f896f2f7	k__Bacteria	p__Bacteroidota	c__Bacteroidia	o__Bacteroidales	f__Prevotellaceae	g__Prevotella	NA
b7d858871c56b4130c6556ce3f29fd20	k__Bacteria	p__Bacteroidota	c__Bacteroidia	o__Bacteroidales	f__Prevotellaceae	g__Prevotella	NA
d81947531814a1fe71c12a67d3cc5c2f	k__Bacteria	p__Bacteroidota	c__Bacteroidia	o__Bacteroidales	f__Prevotellaceae	g__Prevotella	NA
da6a7cba87e0895b9cbe6037b9bd8b3b	k__Bacteria	p__Bacteroidota	c__Bacteroidia	o__Bacteroidales	f__Prevotellaceae	g__Prevotella	NA
675c847bccbc53942ebb7b8cbb4efc4d	k__Bacteria	p__Bacteroidota	c__Bacteroidia	o__Bacteroidales	f__Prevotellaceae	g__Prevotella	NA
f33bfd8864ae5b60963b8b929de87561	k__Bacteria	p__Bacteroidota	c__Bacteroidia	o__Bacteroidales	f__Prevotellaceae	g__Prevotella	NA
77fc8c8486167edc801c5043afff5886	k__Bacteria	p__Bacteroidota	c__Bacteroidia	o__Bacteroidales	f__Prevotellaceae	g__Prevotella	NA
9441ebd7d976e935bd4f3f85ad6b9cd5	k__Bacteria	p__Bacteroidota	c__Bacteroidia	o__Bacteroidales	f__Prevotellaceae	g__uncultured	s__uncultured_bacterium
c890ba30bf6a001d11929e3d668b59ad	k__Bacteria	p__Bacteroidota	c__Bacteroidia	o__Bacteroidales	f__Prevotellaceae	g__Prevotella	NA
26931bf4bb8670b19ce17f4ac2eb65d2	k__Bacteria	p__Bacteroidota	c__Bacteroidia	o__Bacteroidales	f__Prevotellaceae	g__Prevotella	s__Prevotella_histicola
712f610d95151fd7db44bd3a13e3ad15	k__Bacteria	p__Bacteroidota	c__Bacteroidia	o__Bacteroidales	f__Prevotellaceae	g__Prevotella	NA
32f8fd11d2bee278d609a1d4ab767554	k__Bacteria	p__Bacteroidota	c__Bacteroidia	o__Bacteroidales	f__Prevotellaceae	g__Prevotella	s__Prevotella_melaninogenica
6d2fe5e4cd55c89c512f6cd275e19a0f	k__Bacteria	p__Bacteroidota	c__Bacteroidia	o__Bacteroidales	f__Prevotellaceae	g__Prevotella	NA
116b000bcdd330f4319bda48bd997abf	k__Bacteria	p__Bacteroidota	c__Bacteroidia	o__Bacteroidales	f__Prevotellaceae	g__Prevotella	NA
23b8bac0a94108cbf1f74ab89aec965b	k__Bacteria	p__Bacteroidota	c__Bacteroidia	o__Bacteroidales	f__Prevotellaceae	g__Prevotella	s__Prevotella_falsenii
f0801df3310d0f06c07a96b1a2542be0	k__Bacteria	p__Bacteroidota	c__Bacteroidia	o__Bacteroidales	f__Prevotellaceae	g__Prevotella	s__Prevotella_pallens
cbef40f459197faa8de7bba6a4764a34	k__Bacteria	p__Bacteroidota	c__Bacteroidia	o__Bacteroidales	f__Prevotellaceae	g__Prevotella	s__Prevotella_pallens
3f12a0e59a953a1871265f6f4fa579f9	k__Bacteria	p__Bacteroidota	c__Bacteroidia	o__Bacteroidales	f__Prevotellaceae	g__Prevotella	s__Prevotella_paludivivens
84f78f5ce68484506a620a9c8d2e2acf	k__Bacteria	p__Bacteroidota	c__Bacteroidia	o__Bacteroidales	f__Prevotellaceae	g__Prevotella	s__Prevotella_shahii
510fc7ce79e4b9d729b7c819bf9e11c0	k__Bacteria	p__Bacteroidota	c__Bacteroidia	o__Bacteroidales	f__Prevotellaceae	g__Prevotella	NA
49c9253965d56bb180d4f561cf8d84e8	k__Bacteria	p__Bacteroidota	c__Bacteroidia	o__Bacteroidales	f__Prevotellaceae	g__Prevotella	NA
4cddc40fdec49f4b0ff037423eb87508	k__Bacteria	p__Bacteroidota	c__Bacteroidia	o__Bacteroidales	f__Bacteroidaceae	g__Bacteroides	NA
69e34725046181e6cd5f33d9fb348af5	k__Bacteria	p__Bacteroidota	c__Bacteroidia	o__Bacteroidales	f__Porphyromonadaceae	g__Porphyromonas	s__uncultured_bacterium
e63ffa8bebe9df680f70be3bef91764a	k__Bacteria	p__Bacteroidota	c__Bacteroidia	o__Bacteroidales	f__Porphyromonadaceae	g__Porphyromonas	NA
f2962123bb8adaeb1b746ef8a4f7f836	k__Bacteria	p__Bacteroidota	c__Bacteroidia	o__Bacteroidales	f__Porphyromonadaceae	g__Porphyromonas	NA
53574d96bc87bc4627cabdfd91d76f6b	k__Bacteria	p__Bacteroidota	c__Bacteroidia	o__Bacteroidales	f__Porphyromonadaceae	g__Porphyromonas	NA
83e4a73079b72096bd9977dd7432d6c6	k__Bacteria	p__Bacteroidota	c__Bacteroidia	o__Bacteroidales	f__Porphyromonadaceae	g__Porphyromonas	NA
456161d143404951deb16068641baa6a	k__Bacteria	p__Bacteroidota	c__Bacteroidia	o__Bacteroidales	f__Porphyromonadaceae	g__Porphyromonas	NA
899befdfdfdd08fe72df5def771a14b3	k__Bacteria	p__Bacteroidota	c__Bacteroidia	o__Bacteroidales	f__Porphyromonadaceae	g__Porphyromonas	NA
8e6a7b11fe615c61f76969d70ec45683	k__Bacteria	p__Bacteroidota	c__Bacteroidia	o__Bacteroidales	f__Porphyromonadaceae	g__Porphyromonas	NA
b72f553aef14f8ef9f2765e42c6b2d7a	k__Bacteria	p__Bacteroidota	c__Bacteroidia	o__Bacteroidales	f__Porphyromonadaceae	g__Porphyromonas	NA
224102d609b83a172b11bd9115107f16	k__Bacteria	p__Bacteroidota	c__Bacteroidia	o__Bacteroidales	f__Porphyromonadaceae	g__Porphyromonas	NA
7da9ea0ec3649a2fbfa3741ba3fa5f9d	k__Bacteria	p__Bacteroidota	c__Bacteroidia	o__Chitinophagales	f__Chitinophagaceae	g__Filobacterium	s__uncultured_bacterium
8d781fd45124d1e47ca5d12f6d6d4867	k__Bacteria	p__Bacteroidota	c__Bacteroidia	o__Chitinophagales	f__Chitinophagaceae	g__Filobacterium	s__uncultured_bacterium
1a794428f534b81a86ddc63868ee5c79	k__Bacteria	p__Bacteroidota	c__Bacteroidia	o__Chitinophagales	f__Chitinophagaceae	g__Aurantisolimonas	s__metagenome
f7abb471a96bfa8f310a879a94b3c40c	k__Bacteria	p__Bacteroidota	c__Bacteroidia	o__Sphingobacteriales	f__Sphingobacteriaceae	g__Sphingobacterium	s__Sphingobacterium_spiritivorum
6539cdf264635d79b1ab259dd5b3b4f0	k__Bacteria	p__Bacteroidota	c__Bacteroidia	o__Sphingobacteriales	f__Sphingobacteriaceae	g__Pedobacter	NA
0e4b96294f2a2985a5d7fd8c87f7ce6d	k__Bacteria	p__Bacteroidota	c__Bacteroidia	o__Sphingobacteriales	f__Sphingobacteriaceae	g__Pedobacter	NA
3fcc25b2980ff3e947b58c198106dd41	k__Bacteria	p__Bacteroidota	c__Bacteroidia	o__Sphingobacteriales	f__Sphingobacteriaceae	g__Pedobacter	NA
9ec111134b7f857a1d270b470fbf331e	k__Bacteria	p__Campilobacterota	c__Campylobacteria	o__Campylobacterales	f__Helicobacteraceae	g__Helicobacter	s__Helicobacter_fennelliae
c93b4ca3ad027d51d34b0a709e5c8e7d	k__Bacteria	p__Campilobacterota	c__Campylobacteria	o__Campylobacterales	f__Campylobacteraceae	g__Campylobacter	s__Campylobacter_canadensis
740d90e488e102d30a456e0be1424529	k__Bacteria	p__Campilobacterota	c__Campylobacteria	o__Campylobacterales	f__Campylobacteraceae	g__Campylobacter	s__Campylobacter_canadensis
05af8312a092f309b269c945433c8793	k__Bacteria	p__Campilobacterota	c__Campylobacteria	o__Campylobacterales	f__Campylobacteraceae	g__Campylobacter	s__Campylobacter_canadensis
38b148b47cb8a9c1f05e1acbd1aede41	k__Bacteria	p__Campilobacterota	c__Campylobacteria	o__Campylobacterales	f__Campylobacteraceae	g__Campylobacter	s__Campylobacter_canadensis
660d9218a1dcdd1a2c76772bd32a09e3	k__Bacteria	p__Campilobacterota	c__Campylobacteria	o__Campylobacterales	f__Campylobacteraceae	g__Campylobacter	s__Campylobacter_canadensis
534a87137f5cda736f0a6c2b284feeb4	k__Bacteria	p__Campilobacterota	c__Campylobacteria	o__Campylobacterales	f__Campylobacteraceae	g__Campylobacter	s__Campylobacter_canadensis
e66c2bc92d5b9f582ab65e1b557566d0	k__Bacteria	p__Campilobacterota	c__Campylobacteria	o__Campylobacterales	f__Campylobacteraceae	g__Campylobacter	s__Campylobacter_canadensis
bf35f4019fc184fb342f34cc388ae989	k__Bacteria	p__Campilobacterota	c__Campylobacteria	o__Campylobacterales	f__Campylobacteraceae	g__Campylobacter	s__Campylobacter_canadensis
700ccbd453cc5809e234cee03ff7441d	k__Bacteria	p__Campilobacterota	c__Campylobacteria	o__Campylobacterales	f__Campylobacteraceae	g__Campylobacter	s__Campylobacter_canadensis
b0c70610dfa252ae7d04f3c8703cc487	k__Bacteria	p__Campilobacterota	c__Campylobacteria	o__Campylobacterales	f__Campylobacteraceae	g__Campylobacter	s__Campylobacter_canadensis
2b469462420172d5e0cbd09f01470284	k__Bacteria	p__Campilobacterota	c__Campylobacteria	o__Campylobacterales	f__Campylobacteraceae	g__Campylobacter	s__Campylobacter_canadensis
ff6211d2bd501975fa7f02a82e9941ce	k__Bacteria	p__Campilobacterota	c__Campylobacteria	o__Campylobacterales	f__Campylobacteraceae	g__Campylobacter	s__Campylobacter_canadensis
cb1c6b2a65a978f942ed88a1a18a647d	k__Bacteria	p__Campilobacterota	c__Campylobacteria	o__Campylobacterales	f__Campylobacteraceae	g__Campylobacter	NA
98489635e6eb9f5984ffa6a09550122b	k__Bacteria	p__Campilobacterota	c__Campylobacteria	o__Campylobacterales	f__Campylobacteraceae	g__Campylobacter	NA
1e0534062d4980cfbf7b2f7527fd3096	k__Bacteria	p__Campilobacterota	c__Campylobacteria	o__Campylobacterales	f__Campylobacteraceae	g__Campylobacter	NA
ea74b1e5fc10fb3a74f2825d6865d740	k__Bacteria	p__Campilobacterota	c__Campylobacteria	o__Campylobacterales	f__Campylobacteraceae	g__Campylobacter	NA
139e832c69fb177d68bb0f5cb8594845	k__Bacteria	p__Campilobacterota	c__Campylobacteria	o__Campylobacterales	f__Campylobacteraceae	g__Campylobacter	NA
26973a1da4599bd0f344655b62b2cc23	k__Bacteria	p__Campilobacterota	c__Campylobacteria	o__Campylobacterales	f__Campylobacteraceae	g__Campylobacter	NA
c3a43e9dca56be145dbc08c893128e6f	k__Bacteria	p__Campilobacterota	c__Campylobacteria	o__Campylobacterales	f__Campylobacteraceae	g__Campylobacter	s__Campylobacter_showae
70bd26abb09389c3b2492d86d40898cf	k__Bacteria	p__Campilobacterota	c__Campylobacteria	o__Campylobacterales	f__Campylobacteraceae	g__Campylobacter	NA
2c7f71a361403e18f79bf7f4cf3afb87	k__Bacteria	p__Campilobacterota	c__Campylobacteria	o__Campylobacterales	f__Campylobacteraceae	g__Campylobacter	NA
64ad135aaec0335a493399455ed5dd14	k__Bacteria	p__Patescibacteria	c__Saccharimonadia	o__Saccharimonadales	f__Saccharimonadales	g__Saccharimonadales	s__TM7_phylum
aebd127d4e002a91e72bae5f02ee1463	k__Bacteria	p__Deinococcota	c__Deinococci	o__Deinococcales	f__Deinococcaceae	g__Deinococcus	NA
2761fe77546517a10b961f626feca59d	k__Bacteria	p__Patescibacteria	c__Gracilibacteria	o_Absconditabacteriales(SR1)	f_Absconditabacteriales(SR1)	g_Absconditabacteriales(SR1)	s__SR1_bacterium
98aa7bb57619ef31b3aab7b8282b3451	k__Bacteria	p__Patescibacteria	c__Gracilibacteria	o_Absconditabacteriales(SR1)	f_Absconditabacteriales(SR1)	g_Absconditabacteriales(SR1)	s__SR1_bacterium
6e3e062d65c1b047950a2492118eb70b	k__Bacteria	p__Patescibacteria	c__Gracilibacteria	o_Absconditabacteriales(SR1)	f_Absconditabacteriales(SR1)	g_Absconditabacteriales(SR1)	s__SR1_bacterium
6128c061f0201a07dcabe9199a0ba49e	k__Bacteria	p__Spirochaetota	c__Spirochaetia	o__Spirochaetales	f__Spirochaetaceae	g__Treponema	s__Treponema_berlinense
3f6e11d7ef2402e8727aa06d29ce24c1	k__Bacteria	p__Spirochaetota	c__Spirochaetia	o__Spirochaetales	f__Spirochaetaceae	g__Treponema	NA
95bad341693ce7adba4d4fe762e8f5b2	k__Bacteria	p__Spirochaetota	c__Spirochaetia	o__Spirochaetales	f__Spirochaetaceae	g__Treponema	s__Treponema_maltophilum
4ab6728d229767ccc5829b0a3b8f139f	k__Bacteria	p__Spirochaetota	c__Spirochaetia	o__Spirochaetales	f__Spirochaetaceae	g__Treponema	NA
d0927320ada446780d3e125cc548c9ac	k__Bacteria	p__Spirochaetota	c__Spirochaetia	o__Spirochaetales	f__Spirochaetaceae	g__Treponema	s__unidentified
92492a89b08d1e29404c35ba08f01f68	k__Bacteria	p__Spirochaetota	c__Spirochaetia	o__Spirochaetales	f__Spirochaetaceae	g__Treponema	NA
2a1a15bcb8089042a9bd96f11747c526	k__Bacteria	p__Fusobacteriota	c__Fusobacteriia	o__Fusobacteriales	f__Fusobacteriaceae	g__Fusobacterium	NA
ab65dc9c8cb103472dad8df3ad2206a1	k__Bacteria	p__Fusobacteriota	c__Fusobacteriia	o__Fusobacteriales	f__Fusobacteriaceae	g__Fusobacterium	NA
8e8a8f851ead3233a07f8cda15142885	k__Bacteria	p__Fusobacteriota	c__Fusobacteriia	o__Fusobacteriales	f__Fusobacteriaceae	g__Fusobacterium	NA
7a2968d1b152960ec255d04de612f814	k__Bacteria	p__Fusobacteriota	c__Fusobacteriia	o__Fusobacteriales	f__Fusobacteriaceae	g__Fusobacterium	NA
9e27a916ef961771585cc4ef459ca828	k__Bacteria	p__Fusobacteriota	c__Fusobacteriia	o__Fusobacteriales	f__Fusobacteriaceae	g__Fusobacterium	NA
adf49f9046706086b08d4e1eda46525c	k__Bacteria	p__Fusobacteriota	c__Fusobacteriia	o__Fusobacteriales	f__Fusobacteriaceae	g__Fusobacterium	NA
714a83fc11043748846e425804b7603c	k__Bacteria	p__Fusobacteriota	c__Fusobacteriia	o__Fusobacteriales	f__Fusobacteriaceae	g__Fusobacterium	NA
1c5ca49e54e39bfb1568413868a6641b	k__Bacteria	p__Fusobacteriota	c__Fusobacteriia	o__Fusobacteriales	f__Fusobacteriaceae	g__Fusobacterium	NA
c03cfb7503bfe54dba9844581c0da167	k__Bacteria	p__Fusobacteriota	c__Fusobacteriia	o__Fusobacteriales	f__Fusobacteriaceae	g__Fusobacterium	NA
ad027c2e39f567f099ca4fe43e6bcd80	k__Bacteria	p__Fusobacteriota	c__Fusobacteriia	o__Fusobacteriales	f__Fusobacteriaceae	g__Fusobacterium	NA
fbb87e6cb86026e699477563fd6291aa	k__Bacteria	p__Fusobacteriota	c__Fusobacteriia	o__Fusobacteriales	f__Fusobacteriaceae	g__Fusobacterium	NA
891ec38db10d8b723d730ef81aa400cb	k__Bacteria	p__Fusobacteriota	c__Fusobacteriia	o__Fusobacteriales	f__Fusobacteriaceae	g__Fusobacterium	NA
72827c994953a87988555b1752c3d2fe	k__Bacteria	p__Fusobacteriota	c__Fusobacteriia	o__Fusobacteriales	f__Fusobacteriaceae	g__Fusobacterium	NA
8472a38a835527bbe16679f89f9e0bc8	k__Bacteria	p__Fusobacteriota	c__Fusobacteriia	o__Fusobacteriales	f__Fusobacteriaceae	g__Fusobacterium	NA
37125fc6b7326af0e29ddb765d441528	k__Bacteria	p__Fusobacteriota	c__Fusobacteriia	o__Fusobacteriales	f__Fusobacteriaceae	g__Fusobacterium	s__Fusobacterium_mortiferum
6c8eb978a6a72481eb1f4bfdfdc51a30	k__Bacteria	p__Fusobacteriota	c__Fusobacteriia	o__Fusobacteriales	f__Fusobacteriaceae	g__Fusobacterium	NA
7beb3425166d777b19384223e61aa36a	k__Bacteria	p__Fusobacteriota	c__Fusobacteriia	o__Fusobacteriales	f__Fusobacteriaceae	g__Fusobacterium	NA
c885cae6737b13185173764ee4fde3cd	k__Bacteria	p__Fusobacteriota	c__Fusobacteriia	o__Fusobacteriales	f__Fusobacteriaceae	g__Fusobacterium	NA
3df21e281098635b028cc08fb4c77017	k__Bacteria	p__Fusobacteriota	c__Fusobacteriia	o__Fusobacteriales	f__Fusobacteriaceae	g__Fusobacterium	NA
7c2e801ea02e95945967ebb60d9e0637	k__Bacteria	p__Fusobacteriota	c__Fusobacteriia	o__Fusobacteriales	f__Fusobacteriaceae	g__Fusobacterium	NA
12274abadf66a2ac2a2647bbb9bc6f43	k__Bacteria	p__Fusobacteriota	c__Fusobacteriia	o__Fusobacteriales	f__Fusobacteriaceae	g__Fusobacterium	NA
19110865bea32f92d7e104089a2e9bf7	k__Bacteria	p__Fusobacteriota	c__Fusobacteriia	o__Fusobacteriales	f__Fusobacteriaceae	g__Fusobacterium	NA
a98d48f8af741cfcb131c0cd46be9bab	k__Bacteria	p__Fusobacteriota	c__Fusobacteriia	o__Fusobacteriales	f__Fusobacteriaceae	g__Fusobacterium	NA
76f41a937195b523b4afa4cdfd68d994	k__Bacteria	p__Fusobacteriota	c__Fusobacteriia	o__Fusobacteriales	f__Fusobacteriaceae	g__Fusobacterium	NA
e6d24e918a1de879ec63c45791adbdf2	k__Bacteria	p__Fusobacteriota	c__Fusobacteriia	o__Fusobacteriales	f__Fusobacteriaceae	g__Fusobacterium	NA
a97f91b77ce7550a71df88ab38ddc5fd	k__Bacteria	p__Fusobacteriota	c__Fusobacteriia	o__Fusobacteriales	f__Fusobacteriaceae	g__Fusobacterium	NA
8674dcf0cfe35939037fa9a5b986866f	k__Bacteria	p__Fusobacteriota	c__Fusobacteriia	o__Fusobacteriales	f__Fusobacteriaceae	g__Fusobacterium	NA
f4e78e2e397dc8bd3ca2f87c245a8773	k__Bacteria	p__Fusobacteriota	c__Fusobacteriia	o__Fusobacteriales	f__Fusobacteriaceae	g__Fusobacterium	NA
8cb7a412b46a1563748668bbdccbed58	k__Bacteria	p__Fusobacteriota	c__Fusobacteriia	o__Fusobacteriales	f__Fusobacteriaceae	g__Fusobacterium	NA
4a9b8bd29a743ada239277431b6b9cc0	k__Bacteria	p__Fusobacteriota	c__Fusobacteriia	o__Fusobacteriales	f__Fusobacteriaceae	g__Fusobacterium	NA
b39a10230a9863e6b8d1e6d9504f1c4a	k__Bacteria	p__Fusobacteriota	c__Fusobacteriia	o__Fusobacteriales	f__Fusobacteriaceae	g__Fusobacterium	NA
55556a9e46695b3de727d17be82bf4d9	k__Bacteria	p__Fusobacteriota	c__Fusobacteriia	o__Fusobacteriales	f__Fusobacteriaceae	g__Fusobacterium	NA
fa531a9e5007f7d080e555401270d85a	k__Bacteria	p__Fusobacteriota	c__Fusobacteriia	o__Fusobacteriales	f__Fusobacteriaceae	g__Fusobacterium	NA
17640594df4cfd68370b089d48efafab	k__Bacteria	p__Fusobacteriota	c__Fusobacteriia	o__Fusobacteriales	f__Fusobacteriaceae	g__Fusobacterium	NA
c22748d04da2d352854a7b6da3bc4f34	k__Bacteria	p__Fusobacteriota	c__Fusobacteriia	o__Fusobacteriales	f__Fusobacteriaceae	g__Fusobacterium	NA
eaec3537b269faaf09eedbfd87549aad	k__Bacteria	p__Fusobacteriota	c__Fusobacteriia	o__Fusobacteriales	f__Fusobacteriaceae	g__Fusobacterium	NA
eec3c3e16ed3a0e51fe28353ed4f31e4	k__Bacteria	p__Fusobacteriota	c__Fusobacteriia	o__Fusobacteriales	f__Fusobacteriaceae	g__Fusobacterium	NA
12941632fca9469f01b42e089244fb8d	k__Bacteria	p__Fusobacteriota	c__Fusobacteriia	o__Fusobacteriales	f__Fusobacteriaceae	g__Fusobacterium	NA
24e4a3997e50367598b3152939b4fb75	k__Bacteria	p__Fusobacteriota	c__Fusobacteriia	o__Fusobacteriales	f__Fusobacteriaceae	g__Fusobacterium	NA
46994e329da4f3393a8495036589323a	k__Bacteria	p__Fusobacteriota	c__Fusobacteriia	o__Fusobacteriales	f__Fusobacteriaceae	g__Fusobacterium	NA
e2cf3eec6b1c75ee81133be07a767e65	k__Bacteria	p__Fusobacteriota	c__Fusobacteriia	o__Fusobacteriales	f__Fusobacteriaceae	g__Fusobacterium	NA
bd17082ec008bea514740bddd3a285d6	k__Bacteria	p__Fusobacteriota	c__Fusobacteriia	o__Fusobacteriales	f__Fusobacteriaceae	g__Fusobacterium	NA
f7a9db5541f5b7ace4474c73743c0481	k__Bacteria	p__Fusobacteriota	c__Fusobacteriia	o__Fusobacteriales	f__Leptotrichiaceae	g__Leptotrichia	s__uncultured_bacterium
c15ba7772639f42c56f35e97e5e8d48a	k__Bacteria	p__Fusobacteriota	c__Fusobacteriia	o__Fusobacteriales	f__Leptotrichiaceae	g__Leptotrichia	s__Leptotrichia_goodfellowii
5f5a0dbcf08566abdec210b40919e80a	k__Bacteria	p__Fusobacteriota	c__Fusobacteriia	o__Fusobacteriales	f__Leptotrichiaceae	g__Leptotrichia	s__Leptotrichia_goodfellowii
1cb66d96ee53ad0464a7cf199f48a1a3	k__Bacteria	p__Fusobacteriota	c__Fusobacteriia	o__Fusobacteriales	f__Leptotrichiaceae	g__Leptotrichia	s__uncultured_bacterium
58bd2caa4af7ca54235a416d7ae32c8e	k__Bacteria	p__Fusobacteriota	c__Fusobacteriia	o__Fusobacteriales	f__Leptotrichiaceae	g__Leptotrichia	s__uncultured_bacterium
55cc2b7edaba30b1e9c7450b82f0cb2b	k__Bacteria	p__Fusobacteriota	c__Fusobacteriia	o__Fusobacteriales	f__Leptotrichiaceae	g__Leptotrichia	s__uncultured_bacterium
47aa48ec8ec154954dd2d49434737268	k__Bacteria	p__Fusobacteriota	c__Fusobacteriia	o__Fusobacteriales	f__Leptotrichiaceae	g__Leptotrichia	s__uncultured_bacterium
5c5b789d178e6f22d65adaeb35a995fc	k__Bacteria	p__Fusobacteriota	c__Fusobacteriia	o__Fusobacteriales	f__Leptotrichiaceae	g__Leptotrichia	s__uncultured_bacterium
a6fc343dd640208ff0816cdabec0426c	k__Bacteria	p__Fusobacteriota	c__Fusobacteriia	o__Fusobacteriales	f__Leptotrichiaceae	g__Leptotrichia	s__uncultured_bacterium
822042c1e061b6de469404b6cac56aa9	k__Bacteria	p__Fusobacteriota	c__Fusobacteriia	o__Fusobacteriales	f__Leptotrichiaceae	g__Leptotrichia	s__uncultured_bacterium
eb7bbc66c14e2e7e264e734b0f0c01b3	k__Bacteria	p__Fusobacteriota	c__Fusobacteriia	o__Fusobacteriales	f__Leptotrichiaceae	g__Leptotrichia	NA
3eac8b038216422f95f2431ce4b2cf4e	k__Bacteria	p__Fusobacteriota	c__Fusobacteriia	o__Fusobacteriales	f__Leptotrichiaceae	g__Leptotrichia	s__Leptotrichia_wadei
6e1ee71cbf408dd92106150b93a0bfe1	k__Bacteria	p__Fusobacteriota	c__Fusobacteriia	o__Fusobacteriales	f__Leptotrichiaceae	g__Leptotrichia	NA
06693622f18b0d17a3a760c463f71e05	k__Bacteria	p__Fusobacteriota	c__Fusobacteriia	o__Fusobacteriales	f__Leptotrichiaceae	g__Leptotrichia	NA
c481f7cddfafbe8f143fea53336bea23	k__Bacteria	p__Fusobacteriota	c__Fusobacteriia	o__Fusobacteriales	f__Leptotrichiaceae	g__Leptotrichia	NA
52cdd4c3305b200497e8f8061fecb13c	k__Bacteria	p__Fusobacteriota	c__Fusobacteriia	o__Fusobacteriales	f__Leptotrichiaceae	g__Leptotrichia	NA
efe7cc345dac4c2359dcfda96d96376d	k__Bacteria	p__Fusobacteriota	c__Fusobacteriia	o__Fusobacteriales	f__Leptotrichiaceae	g__Leptotrichia	NA
3918f2dc36192512a91b0ee0953b9387	k__Bacteria	p__Fusobacteriota	c__Fusobacteriia	o__Fusobacteriales	f__Leptotrichiaceae	g__Leptotrichia	NA
e1338f53b51df73c057dd911212902fe	k__Bacteria	p__Fusobacteriota	c__Fusobacteriia	o__Fusobacteriales	f__Leptotrichiaceae	g__Leptotrichia	NA
4d4571162fbae9d6ce602994a5dd2a9a	k__Bacteria	p__Fusobacteriota	c__Fusobacteriia	o__Fusobacteriales	f__Leptotrichiaceae	g__Leptotrichia	NA
0cf6f47d179f04197b3594b915bb3b73	k__Bacteria	p__Fusobacteriota	c__Fusobacteriia	o__Fusobacteriales	f__Leptotrichiaceae	g__Leptotrichia	s__Leptotrichia_hofstadii
26d3b95fe6bb4427f481226f783047a4	k__Bacteria	p__Fusobacteriota	c__Fusobacteriia	o__Fusobacteriales	f__Leptotrichiaceae	g__Leptotrichia	NA
ad6bc73d0dfe1b0bc3b7ca77e6f0a8dc	k__Bacteria	p__Fusobacteriota	c__Fusobacteriia	o__Fusobacteriales	f__Leptotrichiaceae	g__Leptotrichia	NA
46b8f9281865478261657da375e28424	k__Bacteria	p__Fusobacteriota	c__Fusobacteriia	o__Fusobacteriales	f__Leptotrichiaceae	g__Leptotrichia	NA
a375ce81db65e848c1f762344851193f	k__Bacteria	p__Fusobacteriota	c__Fusobacteriia	o__Fusobacteriales	f__Leptotrichiaceae	g__Leptotrichia	s__Leptotrichia_hongkongensis
6b15cd3552e3f49e35f1d88fc3fc76eb	k__Bacteria	p__Fusobacteriota	c__Fusobacteriia	o__Fusobacteriales	f__Leptotrichiaceae	g__Leptotrichia	s__Leptotrichia_trevisanii
b4d3722f3030aea9885a8a6fa72bdf01	k__Bacteria	p__Fusobacteriota	c__Fusobacteriia	o__Fusobacteriales	f__Leptotrichiaceae	g__Leptotrichia	NA
56bec34febe4f9b1d5f58b4abe054b90	k__Bacteria	p__Fusobacteriota	c__Fusobacteriia	o__Fusobacteriales	f__Leptotrichiaceae	g__Leptotrichia	NA
a556ae43f7add6af6faadb29fbbf1834	k__Bacteria	p__Fusobacteriota	c__Fusobacteriia	o__Fusobacteriales	f__Leptotrichiaceae	g__Leptotrichia	NA
b0318249edbcc891c3774b7299ac3afd	k__Bacteria	p__Fusobacteriota	c__Fusobacteriia	o__Fusobacteriales	f__Leptotrichiaceae	g__Leptotrichia	s__metagenome
95f1b19195f23a58a9ecc445253a8a1c	k__Bacteria	p__Fusobacteriota	c__Fusobacteriia	o__Fusobacteriales	f__Leptotrichiaceae	g__Streptobacillus	s__uncultured_bacterium
b0039e7430d2b8d443e507933f3075d7	k__Bacteria	p__Patescibacteria	c__Gracilibacteria	o__JGI_0000069-P22	f__JGI_0000069-P22	g__JGI_0000069-P22	NA
0bb321a78fb1ebda6f414b285bc9ff42	k__Bacteria	p__Patescibacteria	c__Gracilibacteria	o__JGI_0000069-P22	f__JGI_0000069-P22	g__JGI_0000069-P22	NA
384f663844f0b134b3d4b8aed83dfac0	k__Bacteria	p__Firmicutes	c__Bacilli	o__Mycoplasmatales	f__Mycoplasmataceae	g__Mycoplasma	NA
463448be7fe6ae1e5a096e746e6974c5	k__Bacteria	p__Acidobacteriota	c__Vicinamibacteria	o__Vicinamibacterales	f__Vicinamibacteraceae	g__Vicinamibacteraceae	s__wastewater_metagenome
4972757722cb02031094addcf082bb27	k__Bacteria	p__Dadabacteria	c__Dadabacteriia	o__Dadabacteriales	f__Dadabacteriales	g__Dadabacteriales	s__uncultured_candidate
32baf769cef5dfd68415214f4901ad8e	k__Bacteria	p__Latescibacterota	c__Latescibacterota	o__Latescibacterota	f__Latescibacterota	g__Latescibacterota	s__saltmarsh_clone
46edd9a681a1c394007859666f76d477	k__Bacteria	p__Proteobacteria	c__Gammaproteobacteria	o__Xanthomonadales	f__Rhodanobacteraceae	g__Luteibacter	NA
70869d0feda2b000386a1851bdfcaffe	k__Bacteria	p__Proteobacteria	c__Gammaproteobacteria	o__Xanthomonadales	f__Rhodanobacteraceae	g__Dokdonella	NA
be74cad9381c15cfaa8e6071aa77e7f4	k__Bacteria	p__Proteobacteria	c__Gammaproteobacteria	o__Xanthomonadales	f__Xanthomonadaceae	g__Stenotrophomonas	NA
6f7d59283d979b17a9834ab4c26d0076	k__Bacteria	p__Proteobacteria	c__Gammaproteobacteria	o__Xanthomonadales	f__Xanthomonadaceae	g__Stenotrophomonas	NA
912f795ef3617aeb65ff9ad69b9567a8	k__Bacteria	p__Proteobacteria	c__Gammaproteobacteria	o__Xanthomonadales	f__Xanthomonadaceae	g__Stenotrophomonas	NA
be97c9932a0a5035cac26dac49a66eb2	k__Bacteria	p__Proteobacteria	c__Gammaproteobacteria	o__Oceanospirillales	f__Alcanivoracaceae1	g__Alcanivorax	NA
970a0f4184a8820116f827e881f75110	k__Bacteria	p__Proteobacteria	c__Gammaproteobacteria	o__Legionellales	f__Legionellaceae	g__Legionella	NA
60f05f9e5d7e74d85a0f74164adcbd07	k__Bacteria	p__Proteobacteria	c__Gammaproteobacteria	o__Pseudomonadales	f__Pseudomonadaceae	g__Pseudomonas	NA
77a1e8bc25be2a0afd352762ed9497ce	k__Bacteria	p__Proteobacteria	c__Gammaproteobacteria	o__Pseudomonadales	f__Pseudomonadaceae	g__Pseudomonas	NA
b4289ab0a9a00034c1fbce477b2c4ded	k__Bacteria	p__Proteobacteria	c__Gammaproteobacteria	o__Pseudomonadales	f__Pseudomonadaceae	g__Pseudomonas	NA
86d6db0b6e15510fa5d27ceae8fd5e0d	k__Bacteria	p__Proteobacteria	c__Gammaproteobacteria	o__Pseudomonadales	f__Pseudomonadaceae	g__Pseudomonas	NA
6376ea6dab7d0fde3cd66f53b57e1484	k__Bacteria	p__Proteobacteria	c__Gammaproteobacteria	o__Pseudomonadales	f__Pseudomonadaceae	g__Pseudomonas	NA
637b9b3f4d1cbb1a10c07817619cdf69	k__Bacteria	p__Proteobacteria	c__Gammaproteobacteria	o__Pseudomonadales	f__Pseudomonadaceae	g__Pseudomonas	NA
1e766995d5d899c5028f77afef6bff77	k__Bacteria	p__Proteobacteria	c__Gammaproteobacteria	o__Pseudomonadales	f__Moraxellaceae	g__Moraxella	NA
3d59754994ad442a8c7e69589d74a6ce	k__Bacteria	p__Proteobacteria	c__Gammaproteobacteria	o__Pseudomonadales	f__Moraxellaceae	g__Moraxella	NA
96536c137cc245cdb18aa943e30eba06	k__Bacteria	p__Proteobacteria	c__Gammaproteobacteria	o__Pseudomonadales	f__Moraxellaceae	g__Alkanindiges	NA
85f7a5b552a1d4564bbfb316eafdf2bf	k__Bacteria	p__Proteobacteria	c__Gammaproteobacteria	o__Pseudomonadales	f__Moraxellaceae	g__Acinetobacter	NA
a6be27329e6caf441973dafe2b0c303d	k__Bacteria	p__Proteobacteria	c__Gammaproteobacteria	o__Pseudomonadales	f__Moraxellaceae	g__Acinetobacter	NA
19242d6e262c55c76fdde74fbd05d9ad	k__Bacteria	p__Proteobacteria	c__Gammaproteobacteria	o__Pseudomonadales	f__Moraxellaceae	g__Acinetobacter	NA
7b881ac7680c0ccc0253deb22f230e1e	k__Bacteria	p__Proteobacteria	c__Gammaproteobacteria	o__Pasteurellales	f__Pasteurellaceae	g__Rodentibacter	NA
d998dd3fa19c17b739083a1ba1553dd1	k__Bacteria	p__Proteobacteria	c__Gammaproteobacteria	o__Pasteurellales	f__Pasteurellaceae	g__Rodentibacter	NA
1719b5b8f753472e4f4d58ec01a1693c	k__Bacteria	p__Proteobacteria	c__Gammaproteobacteria	o__Pasteurellales	f__Pasteurellaceae	g__Rodentibacter	NA
53e8f34b14b34a85e09d2cad651f71ae	k__Bacteria	p__Proteobacteria	c__Gammaproteobacteria	o__Pasteurellales	f__Pasteurellaceae	g__Rodentibacter	NA
08eea0c16a6996628e45a8f5ad6dbd75	k__Bacteria	p__Proteobacteria	c__Gammaproteobacteria	o__Pasteurellales	f__Pasteurellaceae	g__Rodentibacter	NA
f057bbc717309187476ebe2dfaaf896e	k__Bacteria	p__Proteobacteria	c__Gammaproteobacteria	o__Pasteurellales	f__Pasteurellaceae	g__Rodentibacter	NA
e56768537f475580b0a6214d82fbbd2c	k__Bacteria	p__Proteobacteria	c__Gammaproteobacteria	o__Pasteurellales	f__Pasteurellaceae	g__Rodentibacter	NA
3778c8917a8a5499a2491f640765259b	k__Bacteria	p__Proteobacteria	c__Gammaproteobacteria	o__Pasteurellales	f__Pasteurellaceae	g__Rodentibacter	NA
a7c6d28b5e1b2324721f2dff0e1e8fb5	k__Bacteria	p__Proteobacteria	c__Gammaproteobacteria	o__Pasteurellales	f__Pasteurellaceae	g__Haemophilus	NA
e78ecb138a8bee2a728274b849db12c1	k__Bacteria	p__Proteobacteria	c__Gammaproteobacteria	o__Pasteurellales	f__Pasteurellaceae	g__Aggregatibacter	NA
6009d6fc8b150038745fe8ccf3cf5ef0	k__Bacteria	p__Proteobacteria	c__Gammaproteobacteria	o__Pasteurellales	f__Pasteurellaceae	g__Aggregatibacter	s__Aggregatibacter_actinomycetemcomitans
5a1f8ea54d04e18a7c14a5d2306a842f	k__Bacteria	p__Proteobacteria	c__Gammaproteobacteria	o__Pasteurellales	f__Pasteurellaceae	g__Aggregatibacter	s__Aggregatibacter_actinomycetemcomitans
4bc29222703188e33f91bbc7f5e197cf	k__Bacteria	p__Proteobacteria	c__Gammaproteobacteria	o__Pasteurellales	f__Pasteurellaceae	g__Aggregatibacter	s__Aggregatibacter_actinomycetemcomitans
d1330b8de9059f713830c82d88f3cc1b	k__Bacteria	p__Proteobacteria	c__Gammaproteobacteria	o__Pasteurellales	f__Pasteurellaceae	g__Actinobacillus	NA
1c6676f6f82c2c187e35a381043cd8a8	k__Bacteria	p__Proteobacteria	c__Gammaproteobacteria	o__Pasteurellales	f__Pasteurellaceae	g__Actinobacillus	NA
2e0b0e451c05867a0b6f53cc2647c3de	k__Bacteria	p__Proteobacteria	c__Gammaproteobacteria	o__Pasteurellales	f__Pasteurellaceae	g__Actinobacillus	NA
b444c203840973d0159068701564fceb	k__Bacteria	p__Proteobacteria	c__Gammaproteobacteria	o__Pasteurellales	f__Pasteurellaceae	g__Actinobacillus	NA
acff851a5437a518fdb83cffd7b43dae	k__Bacteria	p__Proteobacteria	c__Gammaproteobacteria	o__Pasteurellales	f__Pasteurellaceae	g__Actinobacillus	s__Haemophilus_parahaemolyticus
0891a144fc69f813d70a273cb534b6b0	k__Bacteria	p__Proteobacteria	c__Gammaproteobacteria	o__Pasteurellales	f__Pasteurellaceae	g__Actinobacillus	NA
ebb890eaad754182c5a491a7d6c3fb8b	k__Bacteria	p__Proteobacteria	c__Gammaproteobacteria	o__Pasteurellales	f__Pasteurellaceae	g__Actinobacillus	NA
09ea62c69c07eb44d971e83b2ce87219	k__Bacteria	p__Proteobacteria	c__Gammaproteobacteria	o__Pasteurellales	f__Pasteurellaceae	g__Actinobacillus	NA
59f7d8a7f37d6eeec95eb556f33da267	k__Bacteria	p__Proteobacteria	c__Gammaproteobacteria	o__Pasteurellales	f__Pasteurellaceae	g__Actinobacillus	NA
c1b603f83feeccc82b783143e3a970f9	k__Bacteria	p__Proteobacteria	c__Gammaproteobacteria	o__Pasteurellales	f__Pasteurellaceae	g__Actinobacillus	NA
5249851d64d7ae50c21aee46d07f7b08	k__Bacteria	p__Proteobacteria	c__Gammaproteobacteria	o__Pasteurellales	f__Pasteurellaceae	g__uncultured	s__Bisgaard_Taxon
5a39170d65625048b4ff1a2465563092	k__Bacteria	p__Proteobacteria	c__Gammaproteobacteria	o__Pasteurellales	f__Pasteurellaceae	g__uncultured	s__Bisgaard_Taxon
b74d9f40f90058164720cbb8531c7c90	k__Bacteria	p__Proteobacteria	c__Gammaproteobacteria	o__Pasteurellales	f__Pasteurellaceae	g__uncultured	s__Bisgaard_Taxon
bc54df7b889fb90fadcb7f804d05d8a0	k__Bacteria	p__Proteobacteria	c__Gammaproteobacteria	o__Pasteurellales	f__Pasteurellaceae	g__uncultured	s__Bisgaard_Taxon
9b9c893d7f6ce1adb95f07ce2c42960e	k__Bacteria	p__Proteobacteria	c__Gammaproteobacteria	o__Pasteurellales	f__Pasteurellaceae	g__uncultured	s__Bisgaard_Taxon
38185326e140564bb33e80e4f24b8f90	k__Bacteria	p__Proteobacteria	c__Gammaproteobacteria	o__Pasteurellales	f__Pasteurellaceae	g__uncultured	s__Bisgaard_Taxon
54c0b458c79be85647cd3cff8e66059b	k__Bacteria	p__Proteobacteria	c__Gammaproteobacteria	o__Pasteurellales	f__Pasteurellaceae	g__uncultured	s__Bisgaard_Taxon
5e433b20d9dee2171f80dad0383d8357	k__Bacteria	p__Proteobacteria	c__Gammaproteobacteria	o__Burkholderiales	f__Rhodocyclaceae	g__Propionivibrio	NA
a05aec2d8945f8d5c15e1575515202b7	k__Bacteria	p__Proteobacteria	c__Gammaproteobacteria	o__Burkholderiales	f__Burkholderiaceae	g__Lautropia	NA
f4801b7a68515d9005fa572ee6afdf41	k__Bacteria	p__Proteobacteria	c__Gammaproteobacteria	o__Burkholderiales	f__Burkholderiaceae	g__Ralstonia	NA
abd34643df4e48940286e05ff8518132	k__Bacteria	p__Proteobacteria	c__Gammaproteobacteria	o__Burkholderiales	f__Oxalobacteraceae	g__Undibacterium	NA
4608fae4bbc9964cdd17af8782f2155e	k__Bacteria	p__Proteobacteria	c__Gammaproteobacteria	o__Burkholderiales	f__Oxalobacteraceae	g__Massilia	NA
ca6c2b3b469c08212142e8821c65882a	k__Bacteria	p__Proteobacteria	c__Gammaproteobacteria	o__Burkholderiales	f__Oxalobacteraceae	g__Massilia	NA
8df2b2e6c1cb64bd18b81d5bae7f0898	k__Bacteria	p__Proteobacteria	c__Gammaproteobacteria	o__Burkholderiales	f__Oxalobacteraceae	g__Massilia	NA
dac91e8bb4941252d8a158fef91c04dd	k__Bacteria	p__Proteobacteria	c__Gammaproteobacteria	o__Burkholderiales	f__Neisseriaceae	g__Alysiella	NA
6ef289e78d35a0091f18292b3d49d471	k__Bacteria	p__Proteobacteria	c__Gammaproteobacteria	o__Burkholderiales	f__Neisseriaceae	g__Alysiella	NA
1ec3448328311caec18abb5e28c5cccf	k__Bacteria	p__Proteobacteria	c__Gammaproteobacteria	o__Burkholderiales	f__Neisseriaceae	g__Kingella	s__uncultured_bacterium
e1d4f1eb76345f33375935a9f39dbde1	k__Bacteria	p__Proteobacteria	c__Gammaproteobacteria	o__Burkholderiales	f__Neisseriaceae	g__Neisseria	NA
b9036f07db75f286b5805c03c1ac4320	k__Bacteria	p__Proteobacteria	c__Gammaproteobacteria	o__Burkholderiales	f__Neisseriaceae	g__Neisseria	s__Neisseria_oralis
a713e827c5a2626f7505099dc81a21b9	k__Bacteria	p__Proteobacteria	c__Gammaproteobacteria	o__Burkholderiales	f__Neisseriaceae	g__Neisseria	NA
4f5efd25dacb5d639316e7291ff6ff8b	k__Bacteria	p__Proteobacteria	c__Gammaproteobacteria	o__Burkholderiales	f__Neisseriaceae	g__Neisseria	NA
53f6674af6b3540c68d03f52f706afc3	k__Bacteria	p__Proteobacteria	c__Gammaproteobacteria	o__Burkholderiales	f__Neisseriaceae	g__Neisseria	NA
f1860fe716257bd5fd5c4c6a16cf3b95	k__Bacteria	p__Proteobacteria	c__Gammaproteobacteria	o__Burkholderiales	f__Neisseriaceae	g__Neisseria	NA
450eece0641870cd6ca54c9e5f0208e9	k__Bacteria	p__Proteobacteria	c__Gammaproteobacteria	o__Cardiobacteriales	f__Cardiobacteriaceae	g__Cardiobacterium	NA
f1dba3ac75a97b30c9f63c29e7e64cc5	k__Bacteria	p__Proteobacteria	c__Gammaproteobacteria	o__Cardiobacteriales	f__Cardiobacteriaceae	g__Cardiobacterium	NA
5737e058385a6a34a3bcfdec9f73df47	k__Bacteria	p__Proteobacteria	c__Gammaproteobacteria	o__Cardiobacteriales	f__Cardiobacteriaceae	g__Cardiobacterium	s__uncultured_bacterium
bac3c0867719c02b3aba4b8343759c33	k__Bacteria	p__Desulfobacterota	c__Desulfovibrionia	o__Desulfovibrionales	f__Desulfovibrionaceae	g__Desulfovibrio	NA
74792adac452eb3544cdc17064d6bbee	k__Bacteria	p__Desulfobacterota	c__Desulfovibrionia	o__Desulfovibrionales	f__Desulfovibrionaceae	g__Desulfovibrio	NA
12392e67db62c8e9a290f91ff957b2d2	k__Bacteria	p__Desulfobacterota	c__Desulfovibrionia	o__Desulfovibrionales	f__Desulfovibrionaceae	g__Desulfovibrio	NA
1a883863725eead9924f1c1ae4f7f3da	k__Bacteria	p__Proteobacteria	c__Alphaproteobacteria	o__Sphingomonadales	f__Sphingomonadaceae	g__Altererythrobacter	s__Porphyrobacter_mercurialis
cb28c53c2cc535734f0575251909154c	k__Bacteria	p__Proteobacteria	c__Alphaproteobacteria	o__Sphingomonadales	f__Sphingomonadaceae	g__Novosphingobium	NA
4b961b84716ac167392b11929d702643	k__Bacteria	p__Proteobacteria	c__Alphaproteobacteria	o__Sphingomonadales	f__Sphingomonadaceae	g__Novosphingobium	NA
57c2dccb6adba677d7c6bfe138d887fd	k__Bacteria	p__Proteobacteria	c__Alphaproteobacteria	o__Sphingomonadales	f__Sphingomonadaceae	g__Sphingomonas	NA
bcba47620c299fd34809f143e3d26dff	k__Bacteria	p__Proteobacteria	c__Alphaproteobacteria	o__Sphingomonadales	f__Sphingomonadaceae	g__Sphingomonas	NA
b5c8ed4496d79b916859402cdf11f0a7	k__Bacteria	p__Proteobacteria	c__Alphaproteobacteria	o__Sphingomonadales	f__Sphingomonadaceae	g__Sphingomonas	NA
9ac3bb1d7dedb08a012692a6f536b5af	k__Bacteria	p__Proteobacteria	c__Alphaproteobacteria	o__Sphingomonadales	f__Sphingomonadaceae	g__Sphingomonas	NA
79d4aa809f431563e812c9b2bc8cdc82	k__Bacteria	p__Proteobacteria	c__Alphaproteobacteria	o__Sphingomonadales	f__Sphingomonadaceae	g__Sphingomonas	NA
6df622888bb6fd97a26850973d17ca34	k__Bacteria	p__Proteobacteria	c__Alphaproteobacteria	o__Sphingomonadales	f__Sphingomonadaceae	g__Sphingomonas	NA
fd9d6b3b6e91b427f130a704a3919d2e	k__Bacteria	p__Proteobacteria	c__Alphaproteobacteria	o__Rhodobacterales	f__Rhodobacteraceae	g__Paracoccus	NA
645ff217bde3ad38899f4ef8c4d9acad	k__Bacteria	p__Proteobacteria	c__Alphaproteobacteria	o__Rhizobiales	f__Rhizobiaceae	g__Mesorhizobium	NA
b3291a2a85ebf15ba10983ef1ee0223a	k__Bacteria	p__Proteobacteria	c__Alphaproteobacteria	o__Rhizobiales	f__Devosiaceae	g__Devosia	NA
cbe9e5f34c7b6768d85759c1248cfddd	k__Bacteria	p__Proteobacteria	c__Alphaproteobacteria	o__Rhizobiales	f__Rhizobiaceae	g__Allorhizobium-Neorhizobium-Pararhizobium-Rhizobium	NA
fc6622c636a5210293fb2873fc4761d9	k__Bacteria	p__Proteobacteria	c__Alphaproteobacteria	o__Rhizobiales	f__Rhizobiaceae	g__Allorhizobium-Neorhizobium-Pararhizobium-Rhizobium	NA
b2bac62667dd5b7b46224f0fdf1b2265	k__Bacteria	p__Proteobacteria	c__Alphaproteobacteria	o__Caulobacterales	f__Caulobacteraceae	g__uncultured	NA
7ad886bb493ed298c1778ec6a0597c5c	k__Bacteria	p__Proteobacteria	c__Alphaproteobacteria	o__Caulobacterales	f__Caulobacteraceae	g__Brevundimonas	NA
a537d8bab85c83b0e74c73c55790324b	k__Bacteria	p__Proteobacteria	c__Alphaproteobacteria	o__Caulobacterales	f__Caulobacteraceae	g__Brevundimonas	NA
8b9e18c3af0357ee00702396af81803b	k__Bacteria	p__Proteobacteria	c__Alphaproteobacteria	o__Caulobacterales	f__Caulobacteraceae	g__Brevundimonas	NA
fca290ee2c3fa91836b16a633cf02585	k__Bacteria	p__Proteobacteria	c__Alphaproteobacteria	o__Caulobacterales	f__Caulobacteraceae	g__Brevundimonas	NA
6326363cc12189a386d6c9e5c711038d	k__Bacteria	p__Proteobacteria	c__Alphaproteobacteria	o__Caulobacterales	f__Caulobacteraceae	g__Asticcacaulis	NA
ab6b7b90747341ce39f82d0a22a1d37d	k__Bacteria	p__Proteobacteria	c__Alphaproteobacteria	o__Rhizobiales	f__Beijerinckiaceae	g__Methylobacterium-Methylorubrum	NA
c4f7f7d843eca4862537b5052067f2bb	k__Bacteria	p__Proteobacteria	c__Alphaproteobacteria	o__Rhizobiales	f__Beijerinckiaceae	g__Methylobacterium-Methylorubrum	s__Methylobacterium_jeotgali
3d3f89fadf28973358458a50d436e91e	k__Bacteria	p__Proteobacteria	c__Alphaproteobacteria	o__Rhizobiales	f__Beijerinckiaceae	g__Methylobacterium-Methylorubrum	s__Methylobacterium_aerolatum
ebdf0e5fb071c5c630db42b089a088b7	k__Bacteria	p__Proteobacteria	c__Alphaproteobacteria	o__Acetobacterales	f__Acetobacteraceae	g__Roseomonas	NA
74c80747312f035e999fed9e4eb935a1	k__Bacteria	p__Acidobacteriota	c__Acidobacteriae	o__Acidobacteriales	f_Acidobacteriaceae(Subgroup_1)	g__Terriglobus	NA
fc365e75b4a6ab38eecb084ef709c308	k__Bacteria	p__Armatimonadota	c__uncultured	o__uncultured	f__uncultured	g__uncultured	NA
45285d514ae9b6a9bfc5d09b7863f6f8	k__Bacteria	p__Acidobacteriota	c__Blastocatellia	o__Blastocatellales	f__Blastocatellaceae	g__Blastocatella	NA
7b28c20e72c6c95b3e604f0849245770	k__Bacteria	p__Verrucomicrobiota	c__Verrucomicrobiae	o__Verrucomicrobiales	f__Akkermansiaceae	g__Akkermansia	s__Akkermansia_muciniphila
9a10a4240bbd0fb6b267de1cbc401651	k__Bacteria	p__Firmicutes	c__Bacilli	o__Alicyclobacillales	f__Alicyclobacillaceae	g__Tumebacillus	NA
3a73e4ba6c1efc15eceed959e5dfcd09	k__Bacteria	p__Firmicutes	c__Bacilli	o__Alicyclobacillales	f__Alicyclobacillaceae	g__Tumebacillus	s__uncultured_Firmicutes
7054b6ac948c1d9d17cfffc3ffafdc6a	k__Bacteria	p__Firmicutes	c__Bacilli	o__Alicyclobacillales	f__Alicyclobacillaceae	g__Tumebacillus	s__uncultured_Firmicutes
a4eac9fcad4c5f9555c01a06d10b6fc6	k__Bacteria	p__Firmicutes	c__Clostridia	o__Peptococcales	f__Peptococcaceae	g__Peptococcus	NA
b39c18497ac6662fe9314617a0618b1c	k__Bacteria	p__Firmicutes	c__Clostridia	o__Peptococcales	f__Peptococcaceae	g__Peptococcus	s__Peptococcus_simiae
e4fcc34b87d3eece6bf92cde47b63d84	k__Bacteria	p__Firmicutes	c__Clostridia	o__Peptococcales	f__Peptococcaceae	g__Peptococcus	s__Peptococcus_simiae
11ea0be31796e3697c0a200809d226c9	k__Bacteria	p__Firmicutes	c__Clostridia	o__Peptococcales	f__Peptococcaceae	g__Peptococcus	s__Peptococcus_simiae
0669483488e6bc7cc96908ebdfe1f160	k__Bacteria	p__Firmicutes	c__Clostridia	o__Peptostreptococcales-Tissierellales	f__Peptostreptococcales-Tissierellales	g__Parvimonas	NA
e93b313352019b8113e7fc66bf757917	k__Bacteria	p__Firmicutes	c__Clostridia	o__Peptostreptococcales-Tissierellales	f__Peptostreptococcales-Tissierellales	g__Parvimonas	NA
08ea1d1191e634047bd4f5d67c3e8b03	k__Bacteria	p__Firmicutes	c__Clostridia	o__Peptostreptococcales-Tissierellales	f__Peptostreptococcales-Tissierellales	g__Parvimonas	NA
40aec1a954f00728a41adf465bfd8ae1	k__Bacteria	p__Firmicutes	c__Clostridia	o__Peptostreptococcales-Tissierellales	f__Peptostreptococcales-Tissierellales	g__Parvimonas	NA
98bcf713cdab713b589f72f2ebcef570	k__Bacteria	p__Firmicutes	c__Clostridia	o__Peptostreptococcales-Tissierellales	f__Peptostreptococcaceae	g__Filifactor	NA
e994ae5567f24a896b477a67916f82a7	k__Bacteria	p__Firmicutes	c__Clostridia	o__Peptostreptococcales-Tissierellales	f__Peptostreptococcaceae	g__Filifactor	NA
e335f74033bc634af43ee6baa84fa247	k__Bacteria	p__Firmicutes	c__Clostridia	o__Peptostreptococcales-Tissierellales	f__Peptostreptococcaceae	g__Romboutsia	NA
cc977711b62615f81f353a181ad959e1	k__Bacteria	p__Firmicutes	c__Clostridia	o__Peptostreptococcales-Tissierellales	f__Peptostreptococcaceae	g__Intestinibacter	NA
b25a309208292a220a84e34a9c8e9f70	k__Bacteria	p__Firmicutes	c__Clostridia	o__Peptostreptococcales-Tissierellales	f__Anaerovoracaceae	g__[Eubacterium]_brachy_group	NA
5e6462a5cd16be9501cf2b4effe78a3d	k__Bacteria	p__Firmicutes	c__Clostridia	o__Peptostreptococcales-Tissierellales	f__Anaerovoracaceae	g__[Eubacterium]_nodatum_group	NA
7fb08fa9b7b2eef6a3db57d0de769227	k__Bacteria	p__Firmicutes	c__Clostridia	o__Peptostreptococcales-Tissierellales	f__Peptostreptococcales-Tissierellales	g__Peptoniphilus	NA
0e4f01e8305f56d0abbe06fd075f657b	k__Bacteria	p__Firmicutes	c__Clostridia	o__Peptostreptococcales-Tissierellales	f__Peptostreptococcaceae	g__Peptostreptococcaceae	s__uncultured_Eubacteriaceae
bc8f4b20da6a7efbc4cb6ede37704096	k__Bacteria	p__Firmicutes	c__Clostridia	o__Peptostreptococcales-Tissierellales	f__Peptostreptococcaceae	g__[Eubacterium]_yurii_group	NA
742523a3a3ffee1ce7b6b8c568053736	k__Bacteria	p__Firmicutes	c__Clostridia	o__Peptostreptococcales-Tissierellales	f__Peptostreptococcaceae	g__[Eubacterium]_yurii_group	NA
2c73db9e85fe1ace4b0ed52547c25f7d	k__Bacteria	p__Firmicutes	c__Clostridia	o__Clostridiales	f__Clostridiaceae	g__Clostridium_sensu_stricto_1	NA
9580aa8a52ec18a4e92e701cdb595faa	k__Bacteria	p__Firmicutes	c__Clostridia	o__Clostridiales	f__Clostridiaceae	g__Clostridium_sensu_stricto_1	NA
bde6c86785d8adde4cd2c63c92fad3b1	k__Bacteria	p__Firmicutes	c__Clostridia	o__Clostridiales	f__Clostridiaceae	g__Candidatus_Arthromitus	NA
03dc314a20a7b2ee0d90d01ffd242275	k__Bacteria	p__Firmicutes	c__Clostridia	o__Clostridiales	f__Clostridiaceae	g__Candidatus_Arthromitus	NA
3eb129ba3c12a44620647798dde41194	k__Bacteria	p__Firmicutes	c__Clostridia	o__Clostridia_UCG-014	f__Clostridia_UCG-014	g__Clostridia_UCG-014	s__Clostridiales_bacterium
f22ee0a5903daca754fb643cd345024e	k__Bacteria	p__Firmicutes	c__Clostridia	o__Clostridia_UCG-014	f__Clostridia_UCG-014	g__Clostridia_UCG-014	NA
aefdd711d0f4fb8b0853c92d4aebcddd	k__Bacteria	p__Firmicutes	c__Clostridia	o__Oscillospirales	f__Ruminococcaceae	g__Ruminococcus	NA
0717bc0df2712284d767eb9b61bcba12	k__Bacteria	p__Firmicutes	c__Clostridia	o__Oscillospirales	f__Ruminococcaceae	g__Ruminococcus	NA
b4d8163d0c946cd46dbd0503a132828b	k__Bacteria	p__Firmicutes	c__Clostridia	o__Oscillospirales	f__Ruminococcaceae	g__Paludicola	NA
0d7495cda74fc025bac3da9a05aa1160	k__Bacteria	p__Firmicutes	c__Clostridia	o__Oscillospirales	f__Ruminococcaceae	g__Subdoligranulum	NA
4a20a5244ec9c4dfa60b32a5cb53f0e9	k__Bacteria	p__Firmicutes	c__Clostridia	o__Oscillospirales	f__Ruminococcaceae	g__Faecalibacterium	NA
28bc0918b96a35946dbce4765671f220	k__Bacteria	p__Firmicutes	c__Clostridia	o__Oscillospirales	f__Ruminococcaceae	g__Faecalibacterium	NA
59777186ad2e0947e97615b5d6225136	k__Bacteria	p__Firmicutes	c__Clostridia	o__Oscillospirales	f__Ruminococcaceae	g__Faecalibacterium	NA
f5f5e0da89730462abaf6301a9557193	k__Bacteria	p__Firmicutes	c__Clostridia	o__Oscillospirales	f__Ruminococcaceae	g__Faecalibacterium	NA
3f3053fe60809d04ee141e8ad986eea1	k__Bacteria	p__Firmicutes	c__Clostridia	o__Oscillospirales	f__Ruminococcaceae	g__Fournierella	NA
f0e507b4232d78baef7da47adb64cd0f	k__Bacteria	p__Firmicutes	c__Clostridia	o__Oscillospirales	f__Butyricicoccaceae	g__UCG-008	s__uncultured_bacterium
14fcc0fe267b554476817be95f34c8fc	k__Bacteria	p__Firmicutes	c__Clostridia	o__Oscillospirales	f__Butyricicoccaceae	g__UCG-008	s__uncultured_bacterium
3e1088a9b0a946fd0ce8e3621fb33e85	k__Bacteria	p__Firmicutes	c__Clostridia	o__Oscillospirales	f__Oscillospiraceae	g__NK4A214_group	NA
68d79c3035521e82b504b081a197d2ed	k__Bacteria	p__Firmicutes	c__Clostridia	o__Oscillospirales	f__Oscillospiraceae	g__UCG-002	NA
aae4c4ed528ae16ec417df816699cfdb	k__Bacteria	p__Firmicutes	c__Clostridia	o__Oscillospirales	f__Oscillospiraceae	g__UCG-005	NA
65564efafb80060ef155c05105b8ed0b	k__Bacteria	p__Firmicutes	c__Clostridia	o__Lachnospirales	f__Defluviitaleaceae	g__Defluviitaleaceae_UCG-011	NA
2e4f2b53b856c4def6d021d01f5abb70	k__Bacteria	p__Firmicutes	c__Clostridia	o__Lachnospirales	f__Lachnospiraceae	g__Dorea	NA
d71feb1923fa288790187009e8efa6d3	k__Bacteria	p__Firmicutes	c__Clostridia	o__Lachnospirales	f__Lachnospiraceae	g__Blautia	NA
00a96fbd0ac34bfd245f9c24f8737f7d	k__Bacteria	p__Firmicutes	c__Clostridia	o__Lachnospirales	f__Lachnospiraceae	g__Blautia	NA
9977686c30343be88979f8874db4f5ee	k__Bacteria	p__Firmicutes	c__Clostridia	o__Lachnospirales	f__Lachnospiraceae	g__Blautia	NA
c6c3ab4e828fb40d6e05967b7aac9338	k__Bacteria	p__Firmicutes	c__Clostridia	o__Lachnospirales	f__Lachnospiraceae	g__Blautia	NA
f73bc660ad02cf25a2e30bead37e34fd	k__Bacteria	p__Firmicutes	c__Clostridia	o__Lachnospirales	f__Lachnospiraceae	g__Blautia	NA
db7f42d2a4ded289e177bb4c00edff61	k__Bacteria	p__Firmicutes	c__Clostridia	o__Lachnospirales	f__Lachnospiraceae	g__Lachnospiraceae_NK4A136_group	NA
2df371c65a7a3622b70415bd07c4081f	k__Bacteria	p__Firmicutes	c__Clostridia	o__Lachnospirales	f__Lachnospiraceae	g__Oribacterium	NA
46251d23749949f510561ffb46810e72	k__Bacteria	p__Firmicutes	c__Clostridia	o__Lachnospirales	f__Lachnospiraceae	g__Oribacterium	s__uncultured_bacterium
8b53c1e7c9d8c5c7f2478c690c456448	k__Bacteria	p__Firmicutes	c__Clostridia	o__Lachnospirales	f__Lachnospiraceae	g__Oribacterium	NA
c05a9b572f318b0d5bed54862e21f4b5	k__Bacteria	p__Firmicutes	c__Clostridia	o__Lachnospirales	f__Lachnospiraceae	g__Lachnoanaerobaculum	s__uncultured_Lachnospiraceae
a97ff4c1f17e5aeb43ae254f3eeaadc5	k__Bacteria	p__Firmicutes	c__Clostridia	o__Lachnospirales	f__Lachnospiraceae	g__Johnsonella	s__uncultured_bacterium
111451892edcf1bab8a7eef279a48829	k__Bacteria	p__Firmicutes	c__Clostridia	o__Lachnospirales	f__Lachnospiraceae	g__Johnsonella	s__uncultured_bacterium
d4c3fc22b3695b304dba9cb14e40871c	k__Bacteria	p__Firmicutes	c__Clostridia	o__Lachnospirales	f__Lachnospiraceae	g__Johnsonella	s__Johnsonella_ignava
5715f067a454fd140c037672cdd136d4	k__Bacteria	p__Firmicutes	c__Clostridia	o__Lachnospirales	f__Lachnospiraceae	g__Johnsonella	s__uncultured_bacterium
0facdd17bfc08b45b9e17f53466cf6d5	k__Bacteria	p__Firmicutes	c__Clostridia	o__Lachnospirales	f__Lachnospiraceae	g__Johnsonella	s__Firmicutes_oral
61eb84d2c1b237d12e5820d0e8491d16	k__Bacteria	p__Firmicutes	c__Clostridia	o__Lachnospirales	f__Lachnospiraceae	g__Johnsonella	s__Firmicutes_oral
893ab04b63ad54ae6f437b9eb337b34a	k__Bacteria	p__Firmicutes	c__Clostridia	o__Lachnospirales	f__Lachnospiraceae	g__Roseburia	NA
bd5ef8f372e09bcf6ec35825be4f053c	k__Bacteria	p__Firmicutes	c__Clostridia	o__Lachnospirales	f__Lachnospiraceae	g__Coprococcus	NA
34c655d69d8d97a4cb465b7ca9b6e4f4	k__Bacteria	p__Firmicutes	c__Clostridia	o__Lachnospirales	f__Lachnospiraceae	g__Anaerosporobacter	s__Caecibacterium_sporoformans
8ddf72eaff96bbb6afd9af5190d41beb	k__Bacteria	p__Firmicutes	c__Clostridia	o__Lachnospirales	f__Lachnospiraceae	g__Anaerosporobacter	s__Caecibacterium_sporoformans
6794caffaf6122c413a2996c8c76f92d	k__Bacteria	p__Firmicutes	c__Clostridia	o__Lachnospirales	f__Lachnospiraceae	g__Anaerosporobacter	s__Caecibacterium_sporoformans
1130a5c382e6a46fb3da317221512084	k__Bacteria	p__Firmicutes	c__Clostridia	o__Lachnospirales	f__Lachnospiraceae	g__Anaerosporobacter	s__Caecibacterium_sporoformans
df63dbbefa3fb2d76c7807e5600fa3a9	k__Bacteria	p__Firmicutes	c__Clostridia	o__Lachnospirales	f__Lachnospiraceae	g__Anaerosporobacter	s__Caecibacterium_sporoformans
6b81b752be929fe8116057f314c04ebb	k__Bacteria	p__Firmicutes	c__Clostridia	o__Lachnospirales	f__Lachnospiraceae	g__Anaerosporobacter	s__Caecibacterium_sporoformans
1a2ccf46173284f8faddf904d183a8f0	k__Bacteria	p__Firmicutes	c__Clostridia	o__Lachnospirales	f__Lachnospiraceae	g__Anaerosporobacter	s__Caecibacterium_sporoformans
c252f2a8b75b40252a6c7b0f3738407b	k__Bacteria	p__Firmicutes	c__Clostridia	o__Lachnospirales	f__Lachnospiraceae	g__Anaerosporobacter	s__Caecibacterium_sporoformans
427549812f9051f8f372ff62ea807e78	k__Bacteria	p__Firmicutes	c__Clostridia	o__Lachnospirales	f__Lachnospiraceae	g__Anaerosporobacter	s__Caecibacterium_sporoformans
43de2d22c3f82423071816f91be76df7	k__Bacteria	p__Firmicutes	c__Clostridia	o__Lachnospirales	f__Lachnospiraceae	g__[Eubacterium]_hallii_group	NA
a9b24370bdb02a8ee91855de7b8b2813	k__Bacteria	p__Actinobacteriota	c__Actinobacteria	o__Bifidobacteriales	f__Bifidobacteriaceae	g__Bifidobacterium	NA
68b2f49cdf7c259310aad8a3d5a88521	k__Bacteria	p__Actinobacteriota	c__Actinobacteria	o__Bifidobacteriales	f__Bifidobacteriaceae	g__Alloscardovia	NA
9463140c5447404906615edb03bca4c8	k__Bacteria	p__Actinobacteriota	c__Actinobacteria	o__Bifidobacteriales	f__Bifidobacteriaceae	g__Alloscardovia	NA
d83f60183d81253a505beaeef3cd168f	k__Bacteria	p__Actinobacteriota	c__Actinobacteria	o__Micrococcales	f__Micrococcaceae	g__Rothia	NA
0987e0bb2312b68231749472c20fc3e8	k__Bacteria	p__Actinobacteriota	c__Actinobacteria	o__Actinomycetales	f__Actinomycetaceae	g__Arcanobacterium	NA
1902045fa7900495d421b8a8f308eb85	k__Bacteria	p__Actinobacteriota	c__Actinobacteria	o__Micrococcales	f__Micrococcaceae	g__Rothia	NA
c6a2f591dadc98f64cee63b02fdbd7a6	k__Bacteria	p__Actinobacteriota	c__Actinobacteria	o__Micrococcales	f__Micrococcaceae	g__Rothia	NA
2721fd42d5373667f111c60faaf21eac	k__Bacteria	p__Actinobacteriota	c__Actinobacteria	o__Micrococcales	f__Micrococcaceae	g__Rothia	NA
24cc3e5ed7ac688aa9ba397a1c975eef	k__Bacteria	p__Actinobacteriota	c__Actinobacteria	o__Micrococcales	f__Micrococcaceae	g__Rothia	NA
4f2e0db8ab996cf7529fe9d41f8cce7a	k__Bacteria	p__Actinobacteriota	c__Actinobacteria	o__Corynebacteriales	f__Corynebacteriaceae	g__Lawsonella	NA
820f6693f569e339f183638cd73a7fe6	k__Bacteria	p__Actinobacteriota	c__Actinobacteria	o__Corynebacteriales	f__Corynebacteriaceae	g__Lawsonella	NA
77a920bd965da12d31f93c1adf2c5ea1	k__Bacteria	p__Actinobacteriota	c__Actinobacteria	o__Corynebacteriales	f__Corynebacteriaceae	g__Corynebacterium	s__Corynebacterium_matruchotii
455219eeb206cd432bf64f51159e0b4c	k__Bacteria	p__Actinobacteriota	c__Actinobacteria	o__Corynebacteriales	f__Corynebacteriaceae	g__Corynebacterium	s__Corynebacterium_durum
aa9b3a1418d146c262ec63305292065a	k__Bacteria	p__Actinobacteriota	c__Actinobacteria	o__Corynebacteriales	f__Corynebacteriaceae	g__Corynebacterium	NA
7d78ed99b08bd1723065fdd795d17e9c	k__Bacteria	p__Actinobacteriota	c__Actinobacteria	o__Corynebacteriales	f__Corynebacteriaceae	g__Corynebacterium	NA
497a26126c9e726c768bdec79e8c4e9b	k__Bacteria	p__Actinobacteriota	c__Actinobacteria	o__Micrococcales	f__Microbacteriaceae	g__Curtobacterium	NA
3cd9ce63f826137d18ca1a11155a21ad	k__Bacteria	p__Actinobacteriota	c__Actinobacteria	o__Micrococcales	f__Microbacteriaceae	g__Leifsonia	NA
77385b25f24d23e87b64319c3bdc63ce	k__Bacteria	p__Actinobacteriota	c__Actinobacteria	o__Micrococcales	f__Cellulomonadaceae	g__Tropheryma	s__uncultured_Tropheryma
d8cd6708752160e97ea91073d838a7a3	k__Bacteria	p__Actinobacteriota	c__Actinobacteria	o__Micrococcales	f__Cellulomonadaceae	g__Tropheryma	s__uncultured_Tropheryma
113e6b62ab32f8b56572e4c4b9ab7a51	k__Bacteria	p__Actinobacteriota	c__Actinobacteria	o__Micrococcales	f__Cellulomonadaceae	g__Tropheryma	s__uncultured_Tropheryma
d39a41028decdb96137579f346520e9d	k__Bacteria	p__Actinobacteriota	c__Actinobacteria	o__Micrococcales	f__Cellulomonadaceae	g__Tropheryma	s__uncultured_Tropheryma
128e171e4b500bd005076b40f2baf55e	k__Bacteria	p__Actinobacteriota	c__Actinobacteria	o__Micrococcales	f__Cellulomonadaceae	g__Tropheryma	s__uncultured_Tropheryma
df8456a1abbfb4c8a2c450b44378d4cb	k__Bacteria	p__Actinobacteriota	c__Actinobacteria	o__Actinomycetales	f__Actinomycetaceae	g__Actinomyces	NA
75a3e20e916ee5ec7dceae34a1bc0209	k__Bacteria	p__Actinobacteriota	c__Actinobacteria	o__Actinomycetales	f__Actinomycetaceae	g__Actinomyces	NA
0ed3a6836e138f14044f6950ad7280d2	k__Bacteria	p__Actinobacteriota	c__Actinobacteria	o__Actinomycetales	f__Actinomycetaceae	g__Actinomyces	NA
971e23d78c4b1b44672665973cff6327	k__Bacteria	p__Actinobacteriota	c__Actinobacteria	o__Actinomycetales	f__Actinomycetaceae	g__Varibaculum	NA
86a086d2aedaf97453458f07c10e29ad	k__Bacteria	p__Actinobacteriota	c__Actinobacteria	o__Actinomycetales	f__Actinomycetaceae	g__Actinomycetaceae	s__Actinomycetaceae_bacterium
40f08ff751166fd3cede946315c73f76	k__Bacteria	p__Actinobacteriota	c__Coriobacteriia	o__Coriobacteriales	f__uncultured	g__uncultured	s__uncultured_bacterium
97f9ce45bbf00eb0dc0db5b7e11e6aab	k__Bacteria	p__Actinobacteriota	c__Coriobacteriia	o__Coriobacteriales	f__Atopobiaceae	g__Atopobium	NA
840d392f141c9aacf0a0728d9a8001be	k__Bacteria	p__Firmicutes	c__Negativicutes	o__Veillonellales-Selenomonadales	f__Selenomonadaceae	g__Selenomonas	NA
c7c3a99e738a8eb43e029959f2a9def9	k__Bacteria	p__Firmicutes	c__Negativicutes	o__Veillonellales-Selenomonadales	f__Selenomonadaceae	g__Selenomonas	NA
cb69064af2354add642bb1a01ed3cab4	k__Bacteria	p__Firmicutes	c__Negativicutes	o__Veillonellales-Selenomonadales	f__Selenomonadaceae	g__Selenomonas	NA
3756682a80bcc83817cb1b5c5366d144	k__Bacteria	p__Firmicutes	c__Negativicutes	o__Veillonellales-Selenomonadales	f__Selenomonadaceae	g__Selenomonas	NA
dcb780205dff9735d08f1a23c93470cf	k__Bacteria	p__Firmicutes	c__Negativicutes	o__Veillonellales-Selenomonadales	f__Selenomonadaceae	g__Selenomonas	s__Selenomonas_sputigena
94a302cc7a648f23c27353f085b24e06	k__Bacteria	p__Firmicutes	c__Negativicutes	o__Veillonellales-Selenomonadales	f__Selenomonadaceae	g__Anaerovibrio	NA
4389ca84941288b4c15ae6c6b8cb5313	k__Bacteria	p__Firmicutes	c__Negativicutes	o__Veillonellales-Selenomonadales	f__Veillonellaceae	g__Veillonella	NA
843c1e156a6272162022b488a158df60	k__Bacteria	p__Firmicutes	c__Negativicutes	o__Veillonellales-Selenomonadales	f__Veillonellaceae	g__Veillonella	NA
8e9f26df4f3f78c0492321dc7c6216ec	k__Bacteria	p__Firmicutes	c__Negativicutes	o__Veillonellales-Selenomonadales	f__Veillonellaceae	g__Veillonella	NA
531712f52227b63c1021521ebd29c475	k__Bacteria	p__Firmicutes	c__Negativicutes	o__Veillonellales-Selenomonadales	f__Veillonellaceae	g__Veillonella	NA
ea358b1ebdd7b754b4537189f97c220a	k__Bacteria	p__Firmicutes	c__Negativicutes	o__Veillonellales-Selenomonadales	f__Veillonellaceae	g__Veillonella	NA
b022b5312f30be684bdd2cc66030dea5	k__Bacteria	p__Firmicutes	c__Negativicutes	o__Veillonellales-Selenomonadales	f__Veillonellaceae	g__Veillonella	NA
76a2a89fb35336e7b117fc44ff915092	k__Bacteria	p__Firmicutes	c__Negativicutes	o__Veillonellales-Selenomonadales	f__Veillonellaceae	g__Veillonella	NA
cd9401a6bce4a63af516d06d2a843f9d	k__Bacteria	p__Firmicutes	c__Negativicutes	o__Veillonellales-Selenomonadales	f__Veillonellaceae	g__Veillonella	NA
68aed095c691f3c043b9f6fc89890a2d	k__Bacteria	p__Firmicutes	c__Negativicutes	o__Veillonellales-Selenomonadales	f__Veillonellaceae	g__Veillonella	NA
9688f626baffe31c883bafae597fbdae	k__Bacteria	p__Firmicutes	c__Negativicutes	o__Veillonellales-Selenomonadales	f__Veillonellaceae	g__Dialister	NA
be22632d5e3f6175707a3213d7a90ad2	k__Bacteria	p__Firmicutes	c__Negativicutes	o__Veillonellales-Selenomonadales	f__Veillonellaceae	g__Dialister	NA
dbc4e481aa19da376e92bbe4d8ff42d3	k__Bacteria	p__Firmicutes	c__Negativicutes	o__Veillonellales-Selenomonadales	f__Veillonellaceae	g__Dialister	s__uncultured_bacterium
37fd93193e4e5ef521ca38dadafa3a5a	k__Bacteria	p__Firmicutes	c__Negativicutes	o__Veillonellales-Selenomonadales	f__Veillonellaceae	g__Veillonella	NA
eae880eaa9c99650e399d9b4eb5dd3b0	k__Bacteria	p__Firmicutes	c__Negativicutes	o__Veillonellales-Selenomonadales	f__Veillonellaceae	g__Veillonella	NA
0f08a8ba9e95c5cfed91d475028e2855	k__Bacteria	p__Firmicutes	c__Negativicutes	o__Veillonellales-Selenomonadales	f__Veillonellaceae	g__Veillonella	NA
a6797af6081420fae8c781cfde495897	k__Bacteria	p__Firmicutes	c__Negativicutes	o__Veillonellales-Selenomonadales	f__Veillonellaceae	g__Veillonella	NA
923f521b9cf313f1f95c9367e09bbc1c	k__Bacteria	p__Firmicutes	c__Negativicutes	o__Veillonellales-Selenomonadales	f__Veillonellaceae	g__Veillonella	NA
e793490ff3ebd72c4457a0e1f427eb5c	k__Bacteria	p__Firmicutes	c__Negativicutes	o__Veillonellales-Selenomonadales	f__Veillonellaceae	g__Veillonella	NA
e4916954a7b156cbb911bb3c0af10d53	k__Bacteria	p__Firmicutes	c__Bacilli	o__Erysipelotrichales	f__uncultured	g__uncultured	s__uncultured_bacterium
b6254c4d9f9e5f89f3060f6805754c17	k__Bacteria	p__Firmicutes	c__Bacilli	o__Erysipelotrichales	f__uncultured	g__uncultured	s__uncultured_bacterium
a0871318729fc2d9f6ae1be8b45fa952	k__Bacteria	p__Firmicutes	c__Bacilli	o__Erysipelotrichales	f__Erysipelatoclostridiaceae	g__Erysipelatoclostridium	NA
ee864e547658d4889c993de87b1a349a	k__Bacteria	p__Firmicutes	c__Bacilli	o__Erysipelotrichales	f__Erysipelatoclostridiaceae	g__Erysipelotrichaceae_UCG-003	NA
aafb6ca6537c21f170ece1de474769ab	k__Bacteria	p__Firmicutes	c__Bacilli	o__Staphylococcales	f__Staphylococcaceae	g__Staphylococcus	NA
65d43491988bfe557da4d86a5ba25dae	k__Bacteria	p__Firmicutes	c__Bacilli	o__Staphylococcales	f__Staphylococcaceae	g__Staphylococcus	NA
8339a12705dd373194b95ba731c47af8	k__Bacteria	p__Firmicutes	c__Bacilli	o__Staphylococcales	f__Staphylococcaceae	g__Staphylococcus	NA
f849febf52b4ae538554b6e65d7fc47c	k__Bacteria	p__Firmicutes	c__Bacilli	o__Staphylococcales	f__Staphylococcaceae	g__Staphylococcus	NA
126e0259d6df65a50a9d14149a30f477	k__Bacteria	p__Firmicutes	c__Bacilli	o__Staphylococcales	f__Staphylococcaceae	g__Staphylococcus	NA
9e1b1776cd5973bca311645149a85b87	k__Bacteria	p__Firmicutes	c__Bacilli	o__Staphylococcales	f__Staphylococcaceae	g__Staphylococcus	NA
5b30ecd29701a77b385770d15cab1704	k__Bacteria	p__Firmicutes	c__Bacilli	o__Staphylococcales	f__Gemellaceae	g__Gemella	NA
c52d6c2088db628632b7a14c0e5d752d	k__Bacteria	p__Firmicutes	c__Bacilli	o__Staphylococcales	f__Gemellaceae	g__Gemella	NA
d23346fdcf9ebe8e57dbd511acaee05d	k__Bacteria	p__Firmicutes	c__Bacilli	o__Staphylococcales	f__Gemellaceae	g__Gemella	NA
26633175b4d2a2f5feb6ebb9b87321f3	k__Bacteria	p__Firmicutes	c__Bacilli	o__Staphylococcales	f__Gemellaceae	g__Gemella	NA
85c44c83eddc5d3028261a1000b7d0e1	k__Bacteria	p__Firmicutes	c__Bacilli	o__Staphylococcales	f__Gemellaceae	g__Gemella	NA
b03d2e5ac94c7a0d115e5c542e9315e8	k__Bacteria	p__Firmicutes	c__Bacilli	o__Lactobacillales	f__Carnobacteriaceae	g__Dolosigranulum	NA
50fd1c9614c2cdbad76a0cee521fb46b	k__Bacteria	p__Firmicutes	c__Bacilli	o__Lactobacillales	f__Catellicoccaceae	g__Catellicoccus	NA
65641452be75528754b5ae258ba661c1	k__Bacteria	p__Firmicutes	c__Bacilli	o__Lactobacillales	f__Aerococcaceae	g__Aerococcus	NA
29fbc7e5021229480248fa7466a499a2	k__Bacteria	p__Firmicutes	c__Bacilli	o__Lactobacillales	f__Aerococcaceae	g__Abiotrophia	s__uncultured_bacterium
05bd1d289c2bccf4501b2f90976e531b	k__Bacteria	p__Firmicutes	c__Bacilli	o__Lactobacillales	f__Enterococcaceae	g__Enterococcus	NA
8e53132374397c334ee9f914a57b3edd	k__Bacteria	p__Firmicutes	c__Bacilli	o__Lactobacillales	f__Vagococcaceae	g__Vagococcus	NA
95fdd816723ca482a5caba10bea171c8	k__Bacteria	p__Firmicutes	c__Bacilli	o__Lactobacillales	f__Lactobacillaceae	g__Lactobacillus	NA
45d4fe3f6c01f77c2dfc11dd91d3359a	k__Bacteria	p__Firmicutes	c__Bacilli	o__Lactobacillales	f__Lactobacillaceae	g__Lactobacillus	NA
d6a526b572996ed919a3e009473bc860	k__Bacteria	p__Firmicutes	c__Bacilli	o__Lactobacillales	f__Lactobacillaceae	g__Lactobacillus	NA
5d1665b0e47078aaf2b5fe621d09976d	k__Bacteria	p__Firmicutes	c__Bacilli	o__Lactobacillales	f__Lactobacillaceae	g__Lactobacillus	NA
0df6c802966e8670279671824da4f10a	k__Bacteria	p__Firmicutes	c__Bacilli	o__Lactobacillales	f__Lactobacillaceae	g__Lactobacillus	NA
2bd9309f2f97cae51d18d06ea1ca519a	k__Bacteria	p__Firmicutes	c__Bacilli	o__Lactobacillales	f__Carnobacteriaceae	g__Granulicatella	NA
9908fffab7ed4f3bec44cda2f5084d49	k__Bacteria	p__Firmicutes	c__Bacilli	o__Lactobacillales	f__Enterococcaceae	g__Enterococcus	NA
9e75d15ba3717ca20d8aa45e3c4a6bab	k__Bacteria	p__Firmicutes	c__Bacilli	o__Lactobacillales	f__Leuconostocaceae	g__Leuconostoc	NA
06f825b512d903b9230e1a55d87359ee	k__Bacteria	p__Firmicutes	c__Bacilli	o__Lactobacillales	f__Streptococcaceae	g__Streptococcus	NA
55b7b7586b6252b87981f170d6ac11c5	k__Bacteria	p__Firmicutes	c__Bacilli	o__Lactobacillales	f__Streptococcaceae	g__Streptococcus	NA
b4fd80c189d9f173e66fcea1caf8111e	k__Bacteria	p__Firmicutes	c__Bacilli	o__Lactobacillales	f__Streptococcaceae	g__Streptococcus	NA
b2001ab4daf61a63d9d2f980bdf2c3dd	k__Bacteria	p__Firmicutes	c__Bacilli	o__Lactobacillales	f__Streptococcaceae	g__Streptococcus	NA
108bd50f45057fda4dd3f24f9fae46fa	k__Bacteria	p__Firmicutes	c__Bacilli	o__Lactobacillales	f__Streptococcaceae	g__Streptococcus	NA
2cc07609ab15894baed9fe4c508dd12d	k__Bacteria	p__Firmicutes	c__Bacilli	o__Lactobacillales	f__Streptococcaceae	g__Streptococcus	NA
197157305cb21721cdc0e4aadc9460e2	k__Bacteria	p__Firmicutes	c__Bacilli	o__Lactobacillales	f__Streptococcaceae	g__Streptococcus	NA
aa231e014d821dc7845da2972df0a230	k__Bacteria	p__Firmicutes	c__Bacilli	o__Lactobacillales	f__Streptococcaceae	g__Streptococcus	NA
41c50945f46692bc4a1552bfcb20f397	k__Bacteria	p__Firmicutes	c__Bacilli	o__Lactobacillales	f__Streptococcaceae	g__Streptococcus	NA
94b8f960aa3adb2f6f23adf0c26e6058	k__Bacteria	p__Firmicutes	c__Bacilli	o__Lactobacillales	f__Streptococcaceae	g__Streptococcus	NA
5179a2d863129db0480a654447b8b62b	k__Bacteria	p__Firmicutes	c__Bacilli	o__Lactobacillales	f__Streptococcaceae	g__Streptococcus	NA
edc9e5c16e40aff1eadce6597940f08f	k__Bacteria	p__Firmicutes	c__Bacilli	o__Lactobacillales	f__Streptococcaceae	g__Streptococcus	NA
492d3ad15aeb63c93e1c94ed7853f5af	k__Bacteria	p__Firmicutes	c__Bacilli	o__Lactobacillales	f__Streptococcaceae	g__Streptococcus	NA
a966196c8aff0e8664f261016da82614	k__Bacteria	p__Firmicutes	c__Bacilli	o__Lactobacillales	f__Streptococcaceae	g__Streptococcus	NA
027cc4e57f832f6792df8fc21ffd9bbb	k__Bacteria	p__Firmicutes	c__Bacilli	o__Lactobacillales	f__Streptococcaceae	g__Streptococcus	NA
4ba7a78de011ba7897f307038d1e1bab	k__Bacteria	p__Firmicutes	c__Bacilli	o__Lactobacillales	f__Streptococcaceae	g__Streptococcus	NA
1b51357852b0b814b4d9918c6f0ab762	k__Bacteria	p__Firmicutes	c__Bacilli	o__Lactobacillales	f__Streptococcaceae	g__Streptococcus	NA
39414efe8e809129734b7c33d06c42b7	k__Bacteria	p__Firmicutes	c__Bacilli	o__Lactobacillales	f__Streptococcaceae	g__Streptococcus	NA
9fec7bdd6bd88e710bd69b15692e54a0	k__Bacteria	p__Firmicutes	c__Bacilli	o__Lactobacillales	f__Streptococcaceae	g__Streptococcus	NA
860d345a8b6afb765a0e588654f08c1d	k__Bacteria	p__Firmicutes	c__Bacilli	o__Lactobacillales	f__Streptococcaceae	g__Streptococcus	NA
e7cfd084265c4df4856ca07b1c9b24ee	k__Bacteria	p__Firmicutes	c__Bacilli	o__Lactobacillales	f__Streptococcaceae	g__Streptococcus	s__Streptococcus_mutans
d58e3747278152d2506e3587184efd10	k__Bacteria	p__Firmicutes	c__Bacilli	o__Lactobacillales	f__Streptococcaceae	g__Streptococcus	NA
d114fb4c335125128be28401522dd41a	k__Bacteria	p__Firmicutes	c__Bacilli	o__Lactobacillales	f__Streptococcaceae	g__Lactococcus	NA

H.pylori Metadata

H.pylori Metadata
	SampleID	Treatment	site	Site_status	sex	log10_cfu.gm	IL8_Lavage	IL8_Plasma
LMiller_00458.BAL	LMiller_00458.BAL	H.pylori_(-)	BAL	H.pylori_(-)_BAL	Female	0.00	NA	463.376
LMiller_00458.Swab	LMiller_00458.Swab	H.pylori_(-)	Swab	H.pylori_(-)_Swab	Female	0.00	NA	463.376
LMiller_00459.BAL	LMiller_00459.BAL	H.pylori_(-)	BAL	H.pylori_(-)_BAL	Female	0.00	NA	258.416
LMiller_00459.Swab	LMiller_00459.Swab	H.pylori_(-)	Swab	H.pylori_(-)_Swab	Female	0.00	NA	258.416
LMiller_00461.BAL	LMiller_00461.BAL	H.pylori_(+)	BAL	H.pylori_(+)_BAL	Female	7.66	NA	704.550
LMiller_00461.Swab	LMiller_00461.Swab	H.pylori_(+)	Swab	H.pylori_(+)_Swab	Female	7.66	NA	704.550
LMiller_00462.BAL	LMiller_00462.BAL	H.pylori_(-)	BAL	H.pylori_(-)_BAL	Female	0.00	19.104	1075.626
LMiller_00462.Swab	LMiller_00462.Swab	H.pylori_(-)	Swab	H.pylori_(-)_Swab	Female	0.00	19.104	1075.626
LMiller_00463.BAL	LMiller_00463.BAL	H.pylori_(-)	BAL	H.pylori_(-)_BAL	Female	0.00	11.590	423.590
LMiller_00466.BAL	LMiller_00466.BAL	H.pylori_(+)	BAL	H.pylori_(+)_BAL	Female	3.81	11.201	642.148
LMiller_00466.Swab	LMiller_00466.Swab	H.pylori_(+)	Swab	H.pylori_(+)_Swab	Female	3.81	11.201	642.148
LMiller_00467.BAL	LMiller_00467.BAL	H.pylori_(+)	BAL	H.pylori_(+)_BAL	Female	6.09	15.511	425.782
LMiller_00467.Swab	LMiller_00467.Swab	H.pylori_(+)	Swab	H.pylori_(+)_Swab	Female	6.09	15.511	425.782
LMiller_00468.BAL	LMiller_00468.BAL	H.pylori_(-)	BAL	H.pylori_(-)_BAL	Female	0.00	15.511	660.911
LMiller_00468.Swab	LMiller_00468.Swab	H.pylori_(-)	Swab	H.pylori_(-)_Swab	Female	0.00	15.511	660.911
LMiller_00469.BAL	LMiller_00469.BAL	H.pylori_(+)	BAL	H.pylori_(+)_BAL	Female	6.38	NA	1279.789
LMiller_00469.Swab	LMiller_00469.Swab	H.pylori_(+)	Swab	H.pylori_(+)_Swab	Female	6.38	NA	1279.789
LMiller_00473.BAL	LMiller_00473.BAL	H.pylori_(-)	BAL	H.pylori_(-)_BAL	Female	0.00	20.100	608.508
LMiller_00473.Swab	LMiller_00473.Swab	H.pylori_(-)	Swab	H.pylori_(-)_Swab	Female	0.00	20.100	608.508
LMiller_00474.BAL	LMiller_00474.BAL	H.pylori_(-)	BAL	H.pylori_(-)_BAL	Female	0.00	44.699	443.989
LMiller_00476.BAL	LMiller_00476.BAL	H.pylori_(+)	BAL	H.pylori_(+)_BAL	Female	5.48	NA	476.431
LMiller_00476.Swab	LMiller_00476.Swab	H.pylori_(+)	Swab	H.pylori_(+)_Swab	Female	5.48	NA	476.431
LMiller_00477.BAL	LMiller_00477.BAL	H.pylori_(+)	BAL	H.pylori_(+)_BAL	Female	5.81	NA	715.056
LMiller_00477.Swab	LMiller_00477.Swab	H.pylori_(+)	Swab	H.pylori_(+)_Swab	Female	5.81	NA	715.056
LMiller_00481.BAL	LMiller_00481.BAL	H.pylori_(-)	BAL	H.pylori_(-)_BAL	Female	0.00	17.622	NA
LMiller_00481.Swab	LMiller_00481.Swab	H.pylori_(-)	Swab	H.pylori_(-)_Swab	Female	0.00	17.622	NA

Odds ratios of variables based on H. pylori status

	OR	2.5 %	97.5 %	p
(Intercept)	0.018	0.000	110.146	0.410
infant_weight_kg	0.243	0.000	7254.525	0.786
age_days_infants	1.042	0.955	1.177	0.413
il_bal_pg.ml	0.993	0.852	1.158	0.921
il_plasma_pg.ml	0.996	0.985	1.001	0.271

Sequenced animal IL8 to H. pylori load correlations

This plot only includes animals that had material sequenced and not all 25 animals from the study

This plot only includes animals that had material sequenced and not all 25 animals from the study

## [1] "microtable" "R6"

Overlapping Taxa Between Sites and H. pylori Status

Lavage overlapping taxa

## [1] "microtable" "R6"

Buccal overlapping taxa

## [1] "microtable" "R6"

Lefse analysis and differential abundance for both sites

## [1] "microtable" "R6"

Lefse table

Lefse taxa from bronchoalveolar lavage and oral swab

Lefse taxa from bronchoalveolar lavage and oral swab
	Taxa	Group	pvalue	LDA
k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria	k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria	H.pylori_(-)_Swab	6e-04	5.3955
k__Bacteria|p__Campilobacterota|c__Campylobacteria|o__Campylobacterales|f__Campylobacteraceae	k__Bacteria|p__Campilobacterota|c__Campylobacteria|o__Campylobacterales|f__Campylobacteraceae	H.pylori_(+)_BAL	1e-04	5.3353
k__Bacteria|p__Campilobacterota|c__Campylobacteria|o__Campylobacterales|f__Campylobacteraceae|g__Campylobacter	k__Bacteria|p__Campilobacterota|c__Campylobacteria|o__Campylobacterales|f__Campylobacteraceae|g__Campylobacter	H.pylori_(+)_BAL	1e-04	5.3353
k__Bacteria|p__Campilobacterota|c__Campylobacteria|o__Campylobacterales|f__Campylobacteraceae|g__Campylobacter|s__Campylobacter_canadensis	k__Bacteria|p__Campilobacterota|c__Campylobacteria|o__Campylobacterales|f__Campylobacteraceae|g__Campylobacter|s__Campylobacter_canadensis	H.pylori_(+)_BAL	1e-04	5.3353
k__Bacteria|p__Campilobacterota	k__Bacteria|p__Campilobacterota	H.pylori_(+)_BAL	1e-04	5.3224

Relative abundance of differential taxa

Lefse and differential abundance for bronchoalveolar lavage

## [1] "microtable" "R6"

Lefse table

Lefse Taxa from Bronchoalveolar Lavage

Lefse Taxa from Bronchoalveolar Lavage
	Taxa	Group	pvalue	LDA
k__Bacteria|p__Proteobacteria	k__Bacteria|p__Proteobacteria	H.pylori_(-)_BAL	0.0001	4.9455
k__Bacteria|p__Proteobacteria|c__Alphaproteobacteria	k__Bacteria|p__Proteobacteria|c__Alphaproteobacteria	H.pylori_(-)_BAL	0.0001	4.9325
k__Bacteria|p__Proteobacteria|c__Alphaproteobacteria|o__Rhizobiales	k__Bacteria|p__Proteobacteria|c__Alphaproteobacteria|o__Rhizobiales	H.pylori_(-)_BAL	0.0001	4.9325
k__Bacteria|p__Proteobacteria|c__Alphaproteobacteria|o__Rhizobiales|f__Beijerinckiaceae	k__Bacteria|p__Proteobacteria|c__Alphaproteobacteria|o__Rhizobiales|f__Beijerinckiaceae	H.pylori_(-)_BAL	0.0001	4.9325
k__Bacteria|p__Proteobacteria|c__Alphaproteobacteria|o__Rhizobiales|f__Beijerinckiaceae|g__Methylobacterium-Methylorubrum	k__Bacteria|p__Proteobacteria|c__Alphaproteobacteria|o__Rhizobiales|f__Beijerinckiaceae|g__Methylobacterium-Methylorubrum	H.pylori_(-)_BAL	0.0001	4.9325
k__Bacteria|p__Proteobacteria|c__Alphaproteobacteria|o__Rhizobiales|f__Beijerinckiaceae|g__Methylobacterium-Methylorubrum|s__Methylobacterium_aerolatum	k__Bacteria|p__Proteobacteria|c__Alphaproteobacteria|o__Rhizobiales|f__Beijerinckiaceae|g__Methylobacterium-Methylorubrum|s__Methylobacterium_aerolatum	H.pylori_(-)_BAL	0.0001	4.9046
k__Bacteria|p__Campilobacterota|c__Campylobacteria|o__Campylobacterales|f__Campylobacteraceae|g__Campylobacter|s__Campylobacter_canadensis	k__Bacteria|p__Campilobacterota|c__Campylobacteria|o__Campylobacterales|f__Campylobacteraceae|g__Campylobacter|s__Campylobacter_canadensis	H.pylori_(+)_BAL	0.0001	4.8441
k__Bacteria|p__Campilobacterota|c__Campylobacteria|o__Campylobacterales|f__Campylobacteraceae	k__Bacteria|p__Campilobacterota|c__Campylobacteria|o__Campylobacterales|f__Campylobacteraceae	H.pylori_(+)_BAL	0.0001	4.8273
k__Bacteria|p__Campilobacterota|c__Campylobacteria|o__Campylobacterales|f__Campylobacteraceae|g__Campylobacter	k__Bacteria|p__Campilobacterota|c__Campylobacteria|o__Campylobacterales|f__Campylobacteraceae|g__Campylobacter	H.pylori_(+)_BAL	0.0001	4.8273
k__Bacteria|p__Campilobacterota	k__Bacteria|p__Campilobacterota	H.pylori_(+)_BAL	0.0001	4.8207
k__Bacteria|p__Campilobacterota|c__Campylobacteria	k__Bacteria|p__Campilobacterota|c__Campylobacteria	H.pylori_(+)_BAL	0.0001	4.8207
k__Bacteria|p__Campilobacterota|c__Campylobacteria|o__Campylobacterales	k__Bacteria|p__Campilobacterota|c__Campylobacteria|o__Campylobacterales	H.pylori_(+)_BAL	0.0001	4.8207
k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Flavobacteriales	k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Flavobacteriales	H.pylori_(-)_BAL	0.0001	4.4707
k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Flavobacteriales|f__Flavobacteriaceae	k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Flavobacteriales|f__Flavobacteriaceae	H.pylori_(-)_BAL	0.0001	4.4513
k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Flavobacteriales|f__Flavobacteriaceae|g__Flavobacterium	k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Flavobacteriales|f__Flavobacteriaceae|g__Flavobacterium	H.pylori_(-)_BAL	0.0001	4.4513
k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Flavobacteriales|f__Flavobacteriaceae|g__Flavobacterium|s__Flavobacterium_ceti	k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Flavobacteriales|f__Flavobacteriaceae|g__Flavobacterium|s__Flavobacterium_ceti	H.pylori_(-)_BAL	0.0001	4.4513
k__Bacteria|p__Bacteroidota	k__Bacteria|p__Bacteroidota	H.pylori_(-)_BAL	0.0001	4.3949
k__Bacteria|p__Bacteroidota|c__Bacteroidia	k__Bacteria|p__Bacteroidota|c__Bacteroidia	H.pylori_(-)_BAL	0.0001	4.3949
k__Bacteria|p__Firmicutes	k__Bacteria|p__Firmicutes	H.pylori_(+)_BAL	0.0092	4.1119
k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales	k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales	H.pylori_(-)_BAL	0.0092	4.0882
k__Bacteria|p__Firmicutes|c__Clostridia	k__Bacteria|p__Firmicutes|c__Clostridia	H.pylori_(+)_BAL	0.0092	3.7418
k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Sphingobacteriales	k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Sphingobacteriales	H.pylori_(-)_BAL	0.0059	3.6174
k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Sphingobacteriales|f__Sphingobacteriaceae	k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Sphingobacteriales|f__Sphingobacteriaceae	H.pylori_(-)_BAL	0.0059	3.6174
k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Sphingobacteriales|f__Sphingobacteriaceae|g__Sphingobacterium	k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Sphingobacteriales|f__Sphingobacteriaceae|g__Sphingobacterium	H.pylori_(-)_BAL	0.0059	3.6174
k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Sphingobacteriales|f__Sphingobacteriaceae|g__Sphingobacterium|s__Sphingobacterium_spiritivorum	k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Sphingobacteriales|f__Sphingobacteriaceae|g__Sphingobacterium|s__Sphingobacterium_spiritivorum	H.pylori_(-)_BAL	0.0059	3.6174

Relative abundance of differential taxa

Lefse and differential abundance for oral swabs

## [1] "microtable" "R6"

Lefse table

Lefse Taxa from oral swabs

Lefse taxa from oral swabs
	Taxa	Group	pvalue	LDA
k__Bacteria|p__Proteobacteria	k__Bacteria|p__Proteobacteria	H.pylori_(-)_Swab	0.0005	5.0119
k__Bacteria|p__Fusobacteriota|c__Fusobacteriia|o__Fusobacteriales|f__Leptotrichiaceae	k__Bacteria|p__Fusobacteriota|c__Fusobacteriia|o__Fusobacteriales|f__Leptotrichiaceae	H.pylori_(+)_Swab	0.0039	5.0018
k__Bacteria|p__Fusobacteriota|c__Fusobacteriia|o__Fusobacteriales|f__Leptotrichiaceae|g__Leptotrichia	k__Bacteria|p__Fusobacteriota|c__Fusobacteriia|o__Fusobacteriales|f__Leptotrichiaceae|g__Leptotrichia	H.pylori_(+)_Swab	0.0039	5.0018
k__Bacteria|p__Fusobacteriota	k__Bacteria|p__Fusobacteriota	H.pylori_(+)_Swab	0.0039	5.0008
k__Bacteria|p__Fusobacteriota|c__Fusobacteriia|o__Fusobacteriales	k__Bacteria|p__Fusobacteriota|c__Fusobacteriia|o__Fusobacteriales	H.pylori_(+)_Swab	0.0039	5.0008
k__Bacteria|p__Fusobacteriota|c__Fusobacteriia	k__Bacteria|p__Fusobacteriota|c__Fusobacteriia	H.pylori_(+)_Swab	0.0039	5.0008
k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria	k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria	H.pylori_(-)_Swab	0.0039	4.9702
k__Bacteria|p__Fusobacteriota|c__Fusobacteriia|o__Fusobacteriales|f__Leptotrichiaceae|g__Leptotrichia|s__Leptotrichia_hongkongensis	k__Bacteria|p__Fusobacteriota|c__Fusobacteriia|o__Fusobacteriales|f__Leptotrichiaceae|g__Leptotrichia|s__Leptotrichia_hongkongensis	H.pylori_(+)_Swab	0.0059	4.9669
k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Pasteurellales	k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Pasteurellales	H.pylori_(-)_Swab	0.0039	4.7096
k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Pasteurellales|f__Pasteurellaceae	k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Pasteurellales|f__Pasteurellaceae	H.pylori_(-)_Swab	0.0039	4.7096
k__Bacteria|p__Patescibacteria	k__Bacteria|p__Patescibacteria	H.pylori_(-)_Swab	0.0092	4.5155
k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Pasteurellales|f__Pasteurellaceae|g__Aggregatibacter	k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Pasteurellales|f__Pasteurellaceae|g__Aggregatibacter	H.pylori_(+)_Swab	0.0039	4.4726
k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Pasteurellales|f__Pasteurellaceae|g__Aggregatibacter|s__Aggregatibacter_actinomycetemcomitans	k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Pasteurellales|f__Pasteurellaceae|g__Aggregatibacter|s__Aggregatibacter_actinomycetemcomitans	H.pylori_(+)_Swab	0.0039	4.4726

Relative abundance of differential taxa

Beta diversity

Unweighted unifrac PCoA plots

##       PC1       PC2        PC3        PC4        PC5        PC6        PC7
## 1 0.38311 0.1122317 0.08255574 0.05624649 0.04518453 0.04178459 0.03697168
##          PC8       PC9      PC10       PC11      PC12       PC13       PC14
## 1 0.03441675 0.0305229 0.0292508 0.02395872 0.0227312 0.01881898 0.01538496
##        PC15       PC16       PC17        PC18        PC19        PC20
## 1 0.0140825 0.01226748 0.01155323 0.008776171 0.007488221 0.004824027
##          PC21        PC22        PC23 PC24 PC25 PC26
## 1 0.003528799 0.002630896 0.001679594    0    0    0

Bray-Curtis

Alpha Diversity

Shannon index by site and H. pylori status

Shannon index by site only

Additional alpha diversity measures

All alpha diversity measurees

Apha Diversity Assessement
Groups	Measure	Test method	p.value	Significance
H.pylori_(-)BAL vs H.pylori(-)_Swab	Observed	KW	0.220
H.pylori_(-)BAL vs H.pylori(+)_BAL	Observed	KW	0.651
H.pylori_(-)BAL vs H.pylori(+)_Swab	Observed	KW	0.081
H.pylori_(-)Swab vs H.pylori(+)_BAL	Observed	KW	0.262
H.pylori_(-)Swab vs H.pylori(+)_Swab	Observed	KW	0.520
H.pylori_(+)BAL vs H.pylori(+)_Swab	Observed	KW	0.109
H.pylori_(-)BAL vs H.pylori(-)Swab vs H.pylori(+)BAL vs H.pylori(+)_Swab	Observed	KW	0.202
H.pylori_(-)BAL vs H.pylori(-)_Swab	Chao1	KW	0.220
H.pylori_(-)BAL vs H.pylori(+)_BAL	Chao1	KW	0.651
H.pylori_(-)BAL vs H.pylori(+)_Swab	Chao1	KW	0.081
H.pylori_(-)Swab vs H.pylori(+)_BAL	Chao1	KW	0.262
H.pylori_(-)Swab vs H.pylori(+)_Swab	Chao1	KW	0.520
H.pylori_(+)BAL vs H.pylori(+)_Swab	Chao1	KW	0.109
H.pylori_(-)BAL vs H.pylori(-)Swab vs H.pylori(+)BAL vs H.pylori(+)_Swab	Chao1	KW	0.202
H.pylori_(-)BAL vs H.pylori(-)_Swab	ACE	KW	0.220
H.pylori_(-)BAL vs H.pylori(+)_BAL	ACE	KW	0.651
H.pylori_(-)BAL vs H.pylori(+)_Swab	ACE	KW	0.081
H.pylori_(-)Swab vs H.pylori(+)_BAL	ACE	KW	0.262
H.pylori_(-)Swab vs H.pylori(+)_Swab	ACE	KW	0.520
H.pylori_(+)BAL vs H.pylori(+)_Swab	ACE	KW	0.109
H.pylori_(-)BAL vs H.pylori(-)Swab vs H.pylori(+)BAL vs H.pylori(+)_Swab	ACE	KW	0.202
H.pylori_(-)BAL vs H.pylori(-)_Swab	Shannon	KW	0.439
H.pylori_(-)BAL vs H.pylori(+)_BAL	Shannon	KW	1.000
H.pylori_(-)BAL vs H.pylori(+)_Swab	Shannon	KW	0.796
H.pylori_(-)Swab vs H.pylori(+)_BAL	Shannon	KW	0.109
H.pylori_(-)Swab vs H.pylori(+)_Swab	Shannon	KW	0.337
H.pylori_(+)BAL vs H.pylori(+)_Swab	Shannon	KW	0.423
H.pylori_(-)BAL vs H.pylori(-)Swab vs H.pylori(+)BAL vs H.pylori(+)_Swab	Shannon	KW	0.540
H.pylori_(-)BAL vs H.pylori(-)_Swab	Simpson	KW	0.519
H.pylori_(-)BAL vs H.pylori(+)_BAL	Simpson	KW	0.699
H.pylori_(-)BAL vs H.pylori(+)_Swab	Simpson	KW	0.699
H.pylori_(-)Swab vs H.pylori(+)_BAL	Simpson	KW	0.109
H.pylori_(-)Swab vs H.pylori(+)_Swab	Simpson	KW	0.423
H.pylori_(+)BAL vs H.pylori(+)_Swab	Simpson	KW	0.262
H.pylori_(-)BAL vs H.pylori(-)Swab vs H.pylori(+)BAL vs H.pylori(+)_Swab	Simpson	KW	0.493
H.pylori_(-)BAL vs H.pylori(-)_Swab	InvSimpson	KW	0.519
H.pylori_(-)BAL vs H.pylori(+)_BAL	InvSimpson	KW	0.699
H.pylori_(-)BAL vs H.pylori(+)_Swab	InvSimpson	KW	0.699
H.pylori_(-)Swab vs H.pylori(+)_BAL	InvSimpson	KW	0.109
H.pylori_(-)Swab vs H.pylori(+)_Swab	InvSimpson	KW	0.423
H.pylori_(+)BAL vs H.pylori(+)_Swab	InvSimpson	KW	0.262
H.pylori_(-)BAL vs H.pylori(-)Swab vs H.pylori(+)BAL vs H.pylori(+)_Swab	InvSimpson	KW	0.493
H.pylori_(-)BAL vs H.pylori(-)_Swab	Fisher	KW	0.606
H.pylori_(-)BAL vs H.pylori(+)_BAL	Fisher	KW	0.699
H.pylori_(-)BAL vs H.pylori(+)_Swab	Fisher	KW	0.796
H.pylori_(-)Swab vs H.pylori(+)_BAL	Fisher	KW	0.631
H.pylori_(-)Swab vs H.pylori(+)_Swab	Fisher	KW	0.631
H.pylori_(+)BAL vs H.pylori(+)_Swab	Fisher	KW	1.000
H.pylori_(-)BAL vs H.pylori(-)Swab vs H.pylori(+)BAL vs H.pylori(+)_Swab	Fisher	KW	0.927
H.pylori_(-)BAL vs H.pylori(-)_Swab	Coverage	KW	NaN	NA
H.pylori_(-)BAL vs H.pylori(+)_BAL	Coverage	KW	NaN	NA
H.pylori_(-)BAL vs H.pylori(+)_Swab	Coverage	KW	NaN	NA
H.pylori_(-)Swab vs H.pylori(+)_BAL	Coverage	KW	NaN	NA
H.pylori_(-)Swab vs H.pylori(+)_Swab	Coverage	KW	NaN	NA
H.pylori_(+)BAL vs H.pylori(+)_Swab	Coverage	KW	NaN	NA
H.pylori_(-)BAL vs H.pylori(-)Swab vs H.pylori(+)BAL vs H.pylori(+)_Swab	Coverage	KW	NaN	NA
H.pylori_(-)BAL vs H.pylori(-)_Swab	PD	KW	0.366
H.pylori_(-)BAL vs H.pylori(+)_BAL	PD	KW	0.699
H.pylori_(-)BAL vs H.pylori(+)_Swab	PD	KW	0.439
H.pylori_(-)Swab vs H.pylori(+)_BAL	PD	KW	0.631
H.pylori_(-)Swab vs H.pylori(+)_Swab	PD	KW	0.749
H.pylori_(+)BAL vs H.pylori(+)_Swab	PD	KW	0.631
H.pylori_(-)BAL vs H.pylori(-)Swab vs H.pylori(+)BAL vs H.pylori(+)_Swab	PD	KW	0.777

Helicobacter positive respiratory samples

Helicobacter positive samples separated by site

Helicobacter positive samples separated by animal

Taxa barplots

Microbiota Composition at Phylum level.

Microbiota Composition at Phylum level.

Average Relative Abundance

Phylum
Taxonomy	Sample	Average Percent Abundance
Acidobacteriota	H.pylori_(+)_BAL	0.1%
Actinobacteriota	H.pylori_(-)_BAL	3.1%
Actinobacteriota	H.pylori_(+)_BAL	1.8%
Actinobacteriota	H.pylori_(+)_Swab	0.1%
Actinobacteriota	H.pylori_(-)_Swab	0%
Bacteroidota	H.pylori_(+)_BAL	21.7%
Bacteroidota	H.pylori_(+)_Swab	17.4%
Bacteroidota	H.pylori_(-)_BAL	14.9%
Bacteroidota	H.pylori_(-)_Swab	10.8%
Campilobacterota	H.pylori_(+)_BAL	12.9%
Campilobacterota	H.pylori_(-)_BAL	7.7%
Campilobacterota	H.pylori_(-)_Swab	0%
Deinococcota	H.pylori_(+)_BAL	0.6%
Desulfobacterota	H.pylori_(-)_BAL	0.1%
Firmicutes	H.pylori_(-)_BAL	31.1%
Firmicutes	H.pylori_(+)_Swab	21.7%
Firmicutes	H.pylori_(-)_Swab	21%
Firmicutes	H.pylori_(+)_BAL	15.2%
Fusobacteriota	H.pylori_(+)_Swab	9.8%
Fusobacteriota	H.pylori_(+)_BAL	8.6%
Fusobacteriota	H.pylori_(-)_BAL	7.8%
Fusobacteriota	H.pylori_(-)_Swab	7%
Latescibacterota	H.pylori_(-)_BAL	0%
Patescibacteria	H.pylori_(-)_Swab	0.4%
Patescibacteria	H.pylori_(+)_Swab	0.3%
Patescibacteria	H.pylori_(+)_BAL	0.3%
Patescibacteria	H.pylori_(-)_BAL	0%
Proteobacteria	H.pylori_(-)_Swab	60.7%
Proteobacteria	H.pylori_(+)_Swab	50.7%
Proteobacteria	H.pylori_(+)_BAL	38.9%
Proteobacteria	H.pylori_(-)_BAL	34.5%
Spirochaetota	H.pylori_(-)_BAL	0.7%

Microbiota Composition at Class level.

Microbiota Composition at Class level.

Average Relative Abundance

Class
Taxonomy	Sample	Average Percent Abundance
Actinobacteria	H.pylori_(-)_BAL	3.1%
Actinobacteria	H.pylori_(+)_BAL	1.7%
Alphaproteobacteria	H.pylori_(+)_BAL	14.7%
Alphaproteobacteria	H.pylori_(-)_BAL	10.7%
Bacilli	H.pylori_(-)_BAL	26%
Bacilli	H.pylori_(-)_Swab	14.9%
Bacilli	H.pylori_(+)_Swab	14.2%
Bacilli	H.pylori_(+)_BAL	9.6%
Bacteroidia	H.pylori_(+)_BAL	21.7%
Bacteroidia	H.pylori_(+)_Swab	17.4%
Bacteroidia	H.pylori_(-)_BAL	14.9%
Bacteroidia	H.pylori_(-)_Swab	10.8%
Campylobacteria	H.pylori_(+)_BAL	12.9%
Campylobacteria	H.pylori_(-)_BAL	7.7%
Clostridia	H.pylori_(-)_BAL	2.7%
Clostridia	H.pylori_(+)_BAL	1.5%
Clostridia	H.pylori_(+)_Swab	0.4%
Clostridia	H.pylori_(-)_Swab	0.4%
Deinococci	H.pylori_(+)_BAL	0.6%
Fusobacteriia	H.pylori_(+)_Swab	9.8%
Fusobacteriia	H.pylori_(+)_BAL	8.6%
Fusobacteriia	H.pylori_(-)_BAL	7.8%
Fusobacteriia	H.pylori_(-)_Swab	7%
Gammaproteobacteria	H.pylori_(-)_Swab	60.7%
Gammaproteobacteria	H.pylori_(+)_Swab	50.7%
Gammaproteobacteria	H.pylori_(+)_BAL	24.3%
Gammaproteobacteria	H.pylori_(-)_BAL	23.8%
Negativicutes	H.pylori_(+)_Swab	7.1%
Negativicutes	H.pylori_(-)_Swab	5.8%
Negativicutes	H.pylori_(+)_BAL	4.1%
Negativicutes	H.pylori_(-)_BAL	2.4%
Spirochaetia	H.pylori_(-)_BAL	0.7%

Microbiota Composition at Order level.

Microbiota Composition at Order level.

Average Relative Abundance

Order
Taxonomy	Sample	Average Percent Abundance
Bacteroidales	H.pylori_(+)_Swab	14.1%
Bacteroidales	H.pylori_(+)_BAL	9.4%
Bacteroidales	H.pylori_(-)_Swab	9.3%
Bacteroidales	H.pylori_(-)_BAL	5.8%
Burkholderiales	H.pylori_(+)_BAL	6.8%
Campylobacterales	H.pylori_(+)_BAL	12.9%
Campylobacterales	H.pylori_(-)_BAL	7.7%
Flavobacteriales	H.pylori_(+)_BAL	11.7%
Flavobacteriales	H.pylori_(-)_BAL	8.4%
Fusobacteriales	H.pylori_(+)_Swab	9.8%
Fusobacteriales	H.pylori_(+)_BAL	8.6%
Fusobacteriales	H.pylori_(-)_BAL	7.8%
Fusobacteriales	H.pylori_(-)_Swab	7%
Lactobacillales	H.pylori_(-)_BAL	15.7%
Lactobacillales	H.pylori_(+)_Swab	12.2%
Lactobacillales	H.pylori_(-)_Swab	12%
Lactobacillales	H.pylori_(+)_BAL	6%
Pasteurellales	H.pylori_(-)_Swab	52.3%
Pasteurellales	H.pylori_(+)_Swab	41%
Pasteurellales	H.pylori_(+)_BAL	12%
Pasteurellales	H.pylori_(-)_BAL	12%
Pseudomonadales	H.pylori_(-)_BAL	10.8%
Pseudomonadales	H.pylori_(-)_Swab	6.4%
Pseudomonadales	H.pylori_(+)_Swab	5.9%
Pseudomonadales	H.pylori_(+)_BAL	4.1%
Rhizobiales	H.pylori_(-)_BAL	9.6%
Rhizobiales	H.pylori_(+)_BAL	8.3%
Sphingomonadales	H.pylori_(+)_BAL	5.8%
Staphylococcales	H.pylori_(-)_BAL	10.1%
Veillonellales-Selenomonadales	H.pylori_(+)_Swab	7.1%
Veillonellales-Selenomonadales	H.pylori_(-)_Swab	5.8%
Veillonellales-Selenomonadales	H.pylori_(+)_BAL	4.1%

Microbiota Composition at Family level.

Microbiota Composition at Family level.

Average Relative Abundance

Family
Taxonomy	Sample	Average Percent Abundance
Beijerinckiaceae	H.pylori_(-)_BAL	9.5%
Beijerinckiaceae	H.pylori_(+)_BAL	8.1%
Campylobacteraceae	H.pylori_(+)_BAL	12.9%
Campylobacteraceae	H.pylori_(-)_BAL	7.7%
Flavobacteriaceae	H.pylori_(+)_BAL	11.5%
Flavobacteriaceae	H.pylori_(-)_BAL	8.3%
Fusobacteriaceae	H.pylori_(+)_BAL	8.5%
Fusobacteriaceae	H.pylori_(+)_Swab	8.2%
Fusobacteriaceae	H.pylori_(-)_BAL	7.4%
Fusobacteriaceae	H.pylori_(-)_Swab	6.6%
Moraxellaceae	H.pylori_(-)_BAL	10.1%
Moraxellaceae	H.pylori_(-)_Swab	6.4%
Moraxellaceae	H.pylori_(+)_Swab	5.9%
Oxalobacteraceae	H.pylori_(+)_BAL	5%
Pasteurellaceae	H.pylori_(-)_Swab	52.3%
Pasteurellaceae	H.pylori_(+)_Swab	41%
Pasteurellaceae	H.pylori_(+)_BAL	12%
Pasteurellaceae	H.pylori_(-)_BAL	12%
Porphyromonadaceae	H.pylori_(+)_Swab	10.5%
Porphyromonadaceae	H.pylori_(-)_Swab	5.9%
Porphyromonadaceae	H.pylori_(+)_BAL	4.4%
Prevotellaceae	H.pylori_(+)_BAL	4.3%
Prevotellaceae	H.pylori_(-)_BAL	4.1%
Sphingomonadaceae	H.pylori_(+)_BAL	5.8%
Staphylococcaceae	H.pylori_(-)_BAL	8.4%
Streptococcaceae	H.pylori_(-)_BAL	14.2%
Streptococcaceae	H.pylori_(+)_Swab	12.2%
Streptococcaceae	H.pylori_(-)_Swab	12%
Streptococcaceae	H.pylori_(+)_BAL	4.9%
Veillonellaceae	H.pylori_(+)_Swab	7%
Veillonellaceae	H.pylori_(-)_Swab	5.8%
Veillonellaceae	H.pylori_(+)_BAL	4%

Microbiota Composition at Genus level.

Microbiota Composition at Genus level.

Average Relative Abundance

Genus
Taxonomy	Sample	Average Percent Abundance
Acinetobacter	H.pylori_(-)_BAL	10.1%
Actinobacillus	H.pylori_(-)_Swab	33.1%
Actinobacillus	H.pylori_(+)_Swab	28.1%
Actinobacillus	H.pylori_(-)_BAL	6.6%
Actinobacillus	H.pylori_(+)_BAL	5.9%
Campylobacter	H.pylori_(+)_BAL	12.9%
Campylobacter	H.pylori_(-)_BAL	7.7%
Flavobacterium	H.pylori_(+)_BAL	11.5%
Flavobacterium	H.pylori_(-)_BAL	8.3%
Fusobacterium	H.pylori_(+)_BAL	8.5%
Fusobacterium	H.pylori_(+)_Swab	8.2%
Fusobacterium	H.pylori_(-)_BAL	7.4%
Fusobacterium	H.pylori_(-)_Swab	6.6%
Massilia	H.pylori_(+)_BAL	4.9%
Methylobacterium-Methylorubrum	H.pylori_(-)_BAL	9.5%
Methylobacterium-Methylorubrum	H.pylori_(+)_BAL	8.1%
Moraxella	H.pylori_(-)_Swab	6.4%
Moraxella	H.pylori_(+)_Swab	5.9%
Porphyromonas	H.pylori_(+)_Swab	10.5%
Porphyromonas	H.pylori_(-)_Swab	5.9%
Rodentibacter	H.pylori_(-)_Swab	18.9%
Rodentibacter	H.pylori_(+)_Swab	12.1%
Rodentibacter	H.pylori_(-)_BAL	4.9%
Rodentibacter	H.pylori_(+)_BAL	4.7%
Sphingomonas	H.pylori_(+)_BAL	5.4%
Staphylococcus	H.pylori_(-)_BAL	8.4%
Streptococcus	H.pylori_(-)_BAL	14.2%
Streptococcus	H.pylori_(+)_Swab	12.2%
Streptococcus	H.pylori_(-)_Swab	12%
Streptococcus	H.pylori_(+)_BAL	4.9%
Veillonella	H.pylori_(+)_Swab	7%
Veillonella	H.pylori_(-)_Swab	5.8%

Genera correlation with Il8 concentration (Serum and BAL)

## [1] "microtable" "R6"

IL8 and lavage genus abundance Spearman correlations separated by H. pylori status

IL8 and lavage genus abundance Spearman correlations independent of H. pylori status

Independent of H. pylori status

Lavage IL8 spearman
	Type	Taxa	Env	Correlation	Pvalue	AdjPvalue	Significance
V1	BAL	k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Xanthomonadales|f__Xanthomonadaceae|g__Stenotrophomonas	IL8_Lavage	0.8766	0.0043	0.0428
V2	BAL	k__Bacteria|p__Firmicutes|c__Bacilli|o__Lactobacillales|f__Leuconostocaceae|g__Leuconostoc	IL8_Lavage	-0.0706	0.8681	0.9209
V3	BAL	k__Bacteria|p__Proteobacteria|c__Alphaproteobacteria|o__Caulobacterales|f__Caulobacteraceae|g__Brevundimonas	IL8_Lavage	0.7154	0.0460	0.1840
V4	BAL	k__Bacteria|p__Firmicutes|c__Bacilli|o__Lactobacillales|f__Streptococcaceae|g__Streptococcus	IL8_Lavage	-0.1212	0.7749	0.9209
V5	BAL	k__Bacteria|p__Firmicutes|c__Bacilli|o__Staphylococcales|f__Staphylococcaceae|g__Staphylococcus	IL8_Lavage	0.9323	0.0007	0.0147
V6	BAL	k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Pseudomonadales|f__Pseudomonadaceae|g__Pseudomonas	IL8_Lavage	-0.0991	0.8155	0.9209
V7	BAL	k__Bacteria|p__Fusobacteriota|c__Fusobacteriia|o__Fusobacteriales|f__Fusobacteriaceae|g__Fusobacterium	IL8_Lavage	-0.1952	0.6432	0.9209
V8	BAL	k__Bacteria|p__Campilobacterota|c__Campylobacteria|o__Campylobacterales|f__Campylobacteraceae|g__Campylobacter	IL8_Lavage	-0.0434	0.9186	0.9209
V9	BAL	k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Pasteurellales|f__Pasteurellaceae|g__Rodentibacter	IL8_Lavage	-0.2237	0.5943	0.9209
V10	BAL	k__Bacteria|p__Actinobacteriota|c__Actinobacteria|o__Micrococcales|f__Micrococcaceae|g__Rothia	IL8_Lavage	-0.1758	0.6771	0.9209
V11	BAL	k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Flavobacteriales|f__Flavobacteriaceae|g__Flavobacterium	IL8_Lavage	0.7803	0.0223	0.1490
V12	BAL	k__Bacteria|p__Proteobacteria|c__Alphaproteobacteria|o__Rhizobiales|f__Beijerinckiaceae|g__Methylobacterium-Methylorubrum	IL8_Lavage	0.7498	0.0322	0.1609
V13	BAL	k__Bacteria|p__Firmicutes|c__Negativicutes|o__Veillonellales-Selenomonadales|f__Veillonellaceae|g__Veillonella	IL8_Lavage	-0.2543	0.5433	0.9209
V14	BAL	k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Porphyromonadaceae|g__Porphyromonas	IL8_Lavage	-0.3268	0.4295	0.9209
V15	BAL	k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Pasteurellales|f__Pasteurellaceae|g__Actinobacillus	IL8_Lavage	-0.2950	0.4782	0.9209
V16	BAL	k__Bacteria|p__Firmicutes|c__Bacilli|o__Staphylococcales|f__Gemellaceae|g__Gemella	IL8_Lavage	-0.0681	0.8726	0.9209
V17	BAL	k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella	IL8_Lavage	-0.0422	0.9209	0.9209
V18	BAL	k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Sphingobacteriales|f__Sphingobacteriaceae|g__Sphingobacterium	IL8_Lavage	-0.2547	0.5428	0.9209
V19	BAL	k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Pasteurellales|f__Pasteurellaceae|g__Haemophilus	IL8_Lavage	-0.3512	0.3936	0.9209
V20	BAL	k__Bacteria|p__Proteobacteria|c__Alphaproteobacteria|o__Sphingomonadales|f__Sphingomonadaceae|g__Sphingomonas	IL8_Lavage	-0.1600	0.7051	0.9209

IL8 and lavage alpha diversity Spearman correlations inpendent of H. pylori status.

Independent of H. pylori status

Lavage Alpha Diversity
	Type	Taxa	Env	Correlation	Pvalue	AdjPvalue	Significance
V1	All	Observed	IL8_Lavage	-0.7946	0.0185	0.0415
V2	All	Chao1	IL8_Lavage	-0.7946	0.0185	0.0415
V4	All	ACE	IL8_Lavage	-0.7946	0.0185	0.0415
V5	All	se.ACE	IL8_Lavage	-0.4870	0.2209	0.3314
V6	All	Shannon	IL8_Lavage	-0.4095	0.3137	0.4033
V7	All	Simpson	IL8_Lavage	-0.1975	0.6392	0.6392
V8	All	InvSimpson	IL8_Lavage	-0.3172	0.4439	0.4994
V9	All	Fisher	IL8_Lavage	-0.6583	0.0759	0.1366
V11	All	PD	IL8_Lavage	-0.8086	0.0151	0.0415
V12	All	Observed	IL8_Plasma	-0.4205	0.1525	0.4576
V13	All	Chao1	IL8_Plasma	-0.4205	0.1525	0.4576
V15	All	ACE	IL8_Plasma	-0.4205	0.1525	0.4576
V16	All	se.ACE	IL8_Plasma	-0.1413	0.6453	0.6478
V17	All	Shannon	IL8_Plasma	0.1656	0.5888	0.6478
V18	All	Simpson	IL8_Plasma	0.2500	0.4101	0.6478
V19	All	InvSimpson	IL8_Plasma	0.1402	0.6478	0.6478
V20	All	Fisher	IL8_Plasma	-0.2116	0.4878	0.6478
V22	All	PD	IL8_Plasma	-0.2936	0.3303	0.6478
NA	NA	NA	NA	NA	NA	NA	NA
NA.1	NA	NA	NA	NA	NA	NA	NA

## [1] "microtable" "R6"

IL8 and Buccal genus abundance Spearman correlations separated by H. pylori status

IL8 and Buccal genus abundance Spearman correlations independent of H. pylori status

Independent of H. pylori status

Oral IL8 spearman
	Type	Taxa	Env	Correlation	Pvalue	AdjPvalue	Significance
V1	Swab	k__Bacteria|p__Fusobacteriota|c__Fusobacteriia|o__Fusobacteriales|f__Leptotrichiaceae|g__Leptotrichia	IL8_Lavage	-0.4523	0.3678	0.5676
V2	Swab	k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Pasteurellales|f__Pasteurellaceae|g__Rodentibacter	IL8_Lavage	0.1587	0.7639	0.8721
V3	Swab	k__Bacteria|p__Firmicutes|c__Bacilli|o__Staphylococcales|f__Gemellaceae|g__Gemella	IL8_Lavage	0.6691	0.1461	0.3622
V4	Swab	k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Pseudomonadales|f__Moraxellaceae|g__Moraxella	IL8_Lavage	0.0656	0.9017	0.9491
V5	Swab	k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Pasteurellales|f__Pasteurellaceae|g__Aggregatibacter	IL8_Lavage	-0.8228	0.0443	0.3622
V6	Swab	k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Porphyromonadaceae|g__Porphyromonas	IL8_Lavage	-0.4514	0.3689	0.5676
V7	Swab	k__Bacteria|p__Firmicutes|c__Negativicutes|o__Veillonellales-Selenomonadales|f__Veillonellaceae|g__Veillonella	IL8_Lavage	0.6402	0.1709	0.3622
V8	Swab	k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Burkholderiales|f__Neisseriaceae|g__Neisseria	IL8_Lavage	-0.8919	0.0169	0.3382
V9	Swab	k__Bacteria|p__Firmicutes|c__Clostridia|o__Peptostreptococcales-Tissierellales|f__Peptostreptococcaceae|g__[Eubacterium]_yurii_group	IL8_Lavage	-0.6729	0.1430	0.3622
V10	Swab	k__Bacteria|p__Firmicutes|c__Bacilli|o__Lactobacillales|f__Streptococcaceae|g__Streptococcus	IL8_Lavage	0.2165	0.6804	0.8505
V11	Swab	k__Bacteria|p__Fusobacteriota|c__Fusobacteriia|o__Fusobacteriales|f__Fusobacteriaceae|g__Fusobacterium	IL8_Lavage	-0.6495	0.1627	0.3622
V12	Swab	k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Flavobacteriales|f__Flavobacteriaceae|g__Capnocytophaga	IL8_Lavage	-0.7938	0.0594	0.3622
V13	Swab	k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Pasteurellales|f__Pasteurellaceae|g__Actinobacillus	IL8_Lavage	0.3045	0.5573	0.7431
V14	Swab	k__Bacteria|p__Firmicutes|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Johnsonella	IL8_Lavage	-0.7313	0.0986	0.3622
V15	Swab	k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Flavobacteriales|f__Weeksellaceae|g__Bergeyella	IL8_Lavage	0.3131	0.5457	0.7431
V16	Swab	k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Alloprevotella	IL8_Lavage	0.6092	0.1992	0.3622
V17	Swab	k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella	IL8_Lavage	-0.6191	0.1900	0.3622
V18	Swab	k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Burkholderiales|f__Neisseriaceae|g__Alysiella	IL8_Lavage	-0.1444	0.7849	0.8721
V19	Swab	k__Bacteria|p__Patescibacteria|c__Gracilibacteria|o__Absconditabacteriales_(SR1)|f_Absconditabacteriales(SR1)|g_Absconditabacteriales(SR1)	IL8_Lavage	-0.7323	0.0979	0.3622
V20	Swab	k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Pasteurellales|f__Pasteurellaceae|g__Haemophilus	IL8_Lavage	0.0090	0.9866	0.9866
V21	Swab	k__Bacteria|p__Fusobacteriota|c__Fusobacteriia|o__Fusobacteriales|f__Leptotrichiaceae|g__Leptotrichia	IL8_Plasma	0.1714	0.6144	0.9928
V22	Swab	k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Pasteurellales|f__Pasteurellaceae|g__Rodentibacter	IL8_Plasma	-0.5748	0.0644	0.4290
V23	Swab	k__Bacteria|p__Firmicutes|c__Bacilli|o__Staphylococcales|f__Gemellaceae|g__Gemella	IL8_Plasma	0.2257	0.5045	0.9928
V24	Swab	k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Pseudomonadales|f__Moraxellaceae|g__Moraxella	IL8_Plasma	-0.2685	0.4246	0.9928
V25	Swab	k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Pasteurellales|f__Pasteurellaceae|g__Aggregatibacter	IL8_Plasma	0.0581	0.8653	0.9928
V26	Swab	k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Porphyromonadaceae|g__Porphyromonas	IL8_Plasma	0.7912	0.0037	0.0490
V27	Swab	k__Bacteria|p__Firmicutes|c__Negativicutes|o__Veillonellales-Selenomonadales|f__Veillonellaceae|g__Veillonella	IL8_Plasma	0.0086	0.9800	0.9928
V28	Swab	k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Burkholderiales|f__Neisseriaceae|g__Neisseria	IL8_Plasma	-0.1381	0.6855	0.9928
V29	Swab	k__Bacteria|p__Firmicutes|c__Clostridia|o__Peptostreptococcales-Tissierellales|f__Peptostreptococcaceae|g__[Eubacterium]_yurii_group	IL8_Plasma	-0.0809	0.8130	0.9928
V30	Swab	k__Bacteria|p__Firmicutes|c__Bacilli|o__Lactobacillales|f__Streptococcaceae|g__Streptococcus	IL8_Plasma	0.0980	0.7743	0.9928
V31	Swab	k__Bacteria|p__Fusobacteriota|c__Fusobacteriia|o__Fusobacteriales|f__Fusobacteriaceae|g__Fusobacterium	IL8_Plasma	-0.4677	0.1469	0.7346
V32	Swab	k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Flavobacteriales|f__Flavobacteriaceae|g__Capnocytophaga	IL8_Plasma	-0.2721	0.4182	0.9928
V33	Swab	k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Pasteurellales|f__Pasteurellaceae|g__Actinobacillus	IL8_Plasma	0.0031	0.9928	0.9928
V34	Swab	k__Bacteria|p__Firmicutes|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Johnsonella	IL8_Plasma	-0.1446	0.6714	0.9928
V35	Swab	k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Flavobacteriales|f__Weeksellaceae|g__Bergeyella	IL8_Plasma	-0.2584	0.4430	0.9928
V36	Swab	k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Alloprevotella	IL8_Plasma	0.2118	0.5318	0.9928
V37	Swab	k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella	IL8_Plasma	0.0311	0.9276	0.9928
V38	Swab	k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Burkholderiales|f__Neisseriaceae|g__Alysiella	IL8_Plasma	0.7770	0.0049	0.0490
V39	Swab	k__Bacteria|p__Patescibacteria|c__Gracilibacteria|o__Absconditabacteriales_(SR1)|f_Absconditabacteriales(SR1)|g_Absconditabacteriales(SR1)	IL8_Plasma	0.0111	0.9742	0.9928
V40	Swab	k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Pasteurellales|f__Pasteurellaceae|g__Haemophilus	IL8_Plasma	-0.1123	0.7423	0.9928

IL8 and Buccal alpha diversity Spearman correlations independent of H. pylori status

Independent of H. pylori status

Oral alpha diversity
	Type	Taxa	Env	Correlation	Pvalue	AdjPvalue	Significance
V1	All	Observed	IL8_Lavage	-0.8942	0.0162	0.0365
V2	All	Chao1	IL8_Lavage	-0.8942	0.0162	0.0365
V4	All	ACE	IL8_Lavage	-0.8942	0.0162	0.0365
V5	All	se.ACE	IL8_Lavage	-0.2750	0.5978	0.5978
V6	All	Shannon	IL8_Lavage	-0.6374	0.1733	0.2600
V7	All	Simpson	IL8_Lavage	-0.4610	0.3575	0.4022
V8	All	InvSimpson	IL8_Lavage	-0.4959	0.3172	0.4022
V9	All	Fisher	IL8_Lavage	-0.9018	0.0140	0.0365
V11	All	PD	IL8_Lavage	-0.7827	0.0657	0.1182
V12	All	Observed	IL8_Plasma	-0.2154	0.5247	0.9733
V13	All	Chao1	IL8_Plasma	-0.2154	0.5247	0.9733
V15	All	ACE	IL8_Plasma	-0.2154	0.5247	0.9733
V16	All	se.ACE	IL8_Plasma	-0.3212	0.3355	0.9733
V17	All	Shannon	IL8_Plasma	0.0214	0.9501	0.9733
V18	All	Simpson	IL8_Plasma	0.0538	0.8751	0.9733
V19	All	InvSimpson	IL8_Plasma	0.0115	0.9733	0.9733
V20	All	Fisher	IL8_Plasma	-0.1349	0.6926	0.9733
V22	All	PD	IL8_Plasma	-0.1319	0.6991	0.9733
NA	NA	NA	NA	NA	NA	NA	NA
NA.1	NA	NA	NA	NA	NA	NA	NA

Record session information

## R version 4.1.3 (2022-03-10)
## Platform: x86_64-pc-linux-gnu (64-bit)
## Running under: Ubuntu 20.04.4 LTS
## 
## Matrix products: default
## BLAS:   /usr/lib/x86_64-linux-gnu/blas/libblas.so.3.9.0
## LAPACK: /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3.9.0
## 
## locale:
##  [1] LC_CTYPE=C.UTF-8       LC_NUMERIC=C           LC_TIME=C.UTF-8       
##  [4] LC_COLLATE=C.UTF-8     LC_MONETARY=C.UTF-8    LC_MESSAGES=C.UTF-8   
##  [7] LC_PAPER=C.UTF-8       LC_NAME=C              LC_ADDRESS=C          
## [10] LC_TELEPHONE=C         LC_MEASUREMENT=C.UTF-8 LC_IDENTIFICATION=C   
## 
## attached base packages:
## [1] grid      stats4    stats     graphics  grDevices datasets  utils    
## [8] methods   base     
## 
## other attached packages:
##  [1] tidytree_0.3.9              RColorBrewer_1.1-3         
##  [3] ggpubr_0.4.0                microeco_0.3.2             
##  [5] magrittr_2.0.3              kableExtra_1.3.4           
##  [7] tidyMicro_1.48              forcats_0.5.1              
##  [9] stringr_1.4.0               dplyr_1.0.9                
## [11] purrr_0.3.4                 readr_2.1.2                
## [13] tidyr_1.2.0                 tibble_3.1.7               
## [15] tidyverse_1.3.1             qiime2R_0.99.6             
## [17] microbiome_1.16.0           ggplot2_3.3.6              
## [19] ComplexHeatmap_2.10.0       DESeq2_1.34.0              
## [21] SummarizedExperiment_1.24.0 Biobase_2.54.0             
## [23] MatrixGenerics_1.6.0        matrixStats_0.62.0         
## [25] GenomicRanges_1.46.1        GenomeInfoDb_1.30.1        
## [27] IRanges_2.28.0              S4Vectors_0.32.4           
## [29] BiocGenerics_0.40.0         phyloseq_1.38.0            
## [31] questionr_0.7.7             BiocManager_1.30.17        
## [33] sjPlot_2.8.10               readxl_1.4.0               
## [35] remotes_2.4.2               devtools_2.4.3             
## [37] usethis_2.1.5              
## 
## loaded via a namespace (and not attached):
##   [1] estimability_1.3       bit64_4.0.5            knitr_1.39            
##   [4] DelayedArray_0.20.0    data.table_1.14.2      rpart_4.1.16          
##   [7] KEGGREST_1.34.0        RCurl_1.98-1.6         doParallel_1.0.17     
##  [10] generics_0.1.2         callr_3.7.0            timeSeries_3062.100   
##  [13] RSQLite_2.2.13         VGAM_1.1-6             bit_4.0.4             
##  [16] tzdb_0.3.0             webshot_0.5.3          xml2_1.3.3            
##  [19] lubridate_1.8.0        httpuv_1.6.5           assertthat_0.2.1      
##  [22] fBasics_3042.89.1      xfun_0.30              hms_1.1.1             
##  [25] jquerylib_0.1.4        evaluate_0.15          promises_1.2.0.1      
##  [28] fansi_1.0.3            dbplyr_2.1.1           igraph_1.3.1          
##  [31] DBI_1.1.2              geneplotter_1.72.0     htmlwidgets_1.5.4     
##  [34] ellipsis_0.3.2         backports_1.4.1        insight_0.17.0        
##  [37] permute_0.9-7          picante_1.8.2          annotate_1.72.0       
##  [40] vctrs_0.4.1            abind_1.4-5            sjlabelled_1.2.0      
##  [43] cachem_1.0.6           withr_2.5.0            checkmate_2.1.0       
##  [46] emmeans_1.7.3          vegan_2.6-2            prettyunits_1.1.1     
##  [49] svglite_2.1.0          cluster_2.1.3          lazyeval_0.2.2        
##  [52] ape_5.6-2              crayon_1.5.1           genefilter_1.76.0     
##  [55] labeling_0.4.2         pkgconfig_2.0.3        zCompositions_1.4.0-1 
##  [58] nlme_3.1-157           pkgload_1.2.4          nnet_7.3-17           
##  [61] spatial_7.3-11         rlang_1.0.2            lifecycle_1.0.1       
##  [64] miniUI_0.1.1.1         modelr_0.1.8           randomForest_4.7-1    
##  [67] cellranger_1.1.0       rprojroot_2.0.3        datawizard_0.4.0      
##  [70] Matrix_1.4-1           carData_3.0-5          Rhdf5lib_1.16.0       
##  [73] boot_1.3-28            reprex_2.0.1           base64enc_0.1-3       
##  [76] GlobalOptions_0.1.2    processx_3.5.3         png_0.1-7             
##  [79] viridisLite_0.4.0      rjson_0.2.21           stabledist_0.7-1      
##  [82] parameters_0.17.0      bitops_1.0-7           rhdf5filters_1.6.0    
##  [85] Biostrings_2.62.0      blob_1.2.3             GUniFrac_1.5          
##  [88] shape_1.4.6            rstatix_0.7.0          jpeg_0.1-9            
##  [91] ggsignif_0.6.3         ggeffects_1.1.2        scales_1.2.0          
##  [94] memoise_2.0.1          plyr_1.8.7             zlibbioc_1.40.0       
##  [97] compiler_4.1.3         clue_0.3-60            lme4_1.1-29           
## [100] cli_3.3.0              ade4_1.7-19            XVector_0.34.0        
## [103] ps_1.7.0               htmlTable_2.4.0        Formula_1.2-4         
## [106] MASS_7.3-56            mgcv_1.8-40            tidyselect_1.1.2      
## [109] stringi_1.7.6          highr_0.9              yaml_2.3.5            
## [112] locfit_1.5-9.5         ggrepel_0.9.1          latticeExtra_0.6-29   
## [115] sass_0.4.1             tools_4.1.3            parallel_4.1.3        
## [118] circlize_0.4.14        rstudioapi_0.13        statip_0.2.3          
## [121] foreach_1.5.2          foreign_0.8-82         gridExtra_2.3         
## [124] farver_2.1.0           scatterplot3d_0.3-41   Rtsne_0.16            
## [127] stable_1.1.6           digest_0.6.29          shiny_1.7.1           
## [130] Rcpp_1.0.8.3           car_3.0-13             broom_0.8.0           
## [133] performance_0.9.0      later_1.3.0            httr_1.4.3            
## [136] AnnotationDbi_1.56.2   effectsize_0.6.0.1     sjstats_0.18.1        
## [139] colorspace_2.0-3       rvest_1.0.2            brio_1.1.3            
## [142] XML_3.99-0.9           fs_1.5.2               modeest_2.4.0         
## [145] truncnorm_1.0-8        splines_4.1.3          rmutil_1.1.9          
## [148] statmod_1.4.36         yulab.utils_0.0.4      multtest_2.50.0       
## [151] renv_0.15.4            sessioninfo_1.2.2      systemfonts_1.0.4     
## [154] xtable_1.8-4           jsonlite_1.8.0         nloptr_2.0.1          
## [157] timeDate_3043.102      testthat_3.1.4         R6_2.5.1              
## [160] Hmisc_4.7-0            NADA_1.6-1.1           pillar_1.7.0          
## [163] htmltools_0.5.2        mime_0.12              glue_1.6.2            
## [166] fastmap_1.1.0          minqa_1.2.4            DT_0.22               
## [169] BiocParallel_1.28.3    codetools_0.2-18       pkgbuild_1.3.1        
## [172] mvtnorm_1.1-3          utf8_1.2.2             lattice_0.20-45       
## [175] bslib_0.3.1            survival_3.2-13        rmarkdown_2.14        
## [178] desc_1.4.1             biomformat_1.22.0      munsell_0.5.0         
## [181] GetoptLong_1.0.5       rhdf5_2.38.1           GenomeInfoDbData_1.2.7
## [184] iterators_1.0.14       labelled_2.9.0         sjmisc_2.8.9          
## [187] haven_2.5.0            reshape2_1.4.4         gtable_0.3.0          
## [190] bayestestR_0.12.1